View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_13 (Length: 458)
Name: NF20885_high_13
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 120 - 354
Target Start/End: Complemental strand, 1959562 - 1959308
Alignment:
| Q |
120 |
gatttactgatgatgtgaattgtcatgatgatctaaactatacaataccataagaagttgcagagaattcgatcacaacctctgcaactacaaaacttgt |
219 |
Q |
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| T |
1959562 |
gatttactgatgatgtgaattgtcatgatgatctaaactatacaataccataagaagttgcagagaattcgaccacaacctcagcaattacaaaacttat |
1959463 |
T |
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| Q |
220 |
aatttacgtccatgcaatttttgacat--------------------aactaacacctgctacactatttgtgtagtaattagatgcatctatgcacatc |
299 |
Q |
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||||||||| | |||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1959462 |
aatttacgttcgcgcaattgttaacattgattcttttcatcaccacaaactcacacctgctacactatttgtgtagtaattagatgcatctatgcacatc |
1959363 |
T |
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| Q |
300 |
actttatttctttcacttatgtcatgattttgaattatatactagtgtataagta |
354 |
Q |
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| T |
1959362 |
actttatttctttcacttatgtcatgattttgaattatatactagtgtataagta |
1959308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 1959860 - 1959754
Alignment:
| Q |
1 |
ggaatttagaggatgggtagtattgctcaatagaaaagttaagagatgaagccattgagattgagaataaggtaatcaaagttggagatgctatgtca-c |
99 |
Q |
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| T |
1959860 |
ggaatttagaggatgggtagcattgctcaatagaaaagttaagagatgaagccattgaaattgagaataaggtaatcaaagttggagatgctatgtcatc |
1959761 |
T |
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| Q |
100 |
aaaatac |
106 |
Q |
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||||||| |
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| T |
1959760 |
aaaatac |
1959754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 1959230 - 1959201
Alignment:
| Q |
393 |
aatttttatgcaattaaaattgtcaattta |
422 |
Q |
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| T |
1959230 |
aatttttatgcaattaaaattgtcaattta |
1959201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 39748733 - 39748664
Alignment:
| Q |
29 |
aatagaaaagttaagagatgaagccattgagattgagaataaggtaatcaaagttggagatgctatgtca |
98 |
Q |
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| T |
39748733 |
aatagaaaagttaagagatgaagccattgagattgagaataaggtaatcaaagttggagatgctatgtca |
39748664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 26978750 - 26978819
Alignment:
| Q |
29 |
aatagaaaagttaagagatgaagccattgagattgagaataaggtaatcaaagttggagatgctatgtca |
98 |
Q |
| |
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| T |
26978750 |
aatagaaaagttaagagatgaagccattgagattgagaatgaagttatcaaagttggaaatactatgtca |
26978819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 27020443 - 27020512
Alignment:
| Q |
29 |
aatagaaaagttaagagatgaagccattgagattgagaataaggtaatcaaagttggagatgctatgtca |
98 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||||| |||||||| |
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| T |
27020443 |
aatagaaaagttaagagaggaagccattgagattgagaatgaagttatcaaagttggagatactatgtca |
27020512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 27087933 - 27087864
Alignment:
| Q |
29 |
aatagaaaagttaagagatgaagccattgagattgagaataaggtaatcaaagttggagatgctatgtca |
98 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| ||| | || |||||||||||||||||||||||| |
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| T |
27087933 |
aatagaaaagttaagagatgaaaccattgagattgaaaatgaagtgatcaaagttggagatgctatgtca |
27087864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 39747512 - 39747424
Alignment:
| Q |
126 |
ctgatgatgtgaattgtcatgatgatctaaactatacaataccataagaagttgcagagaattcgatcacaacctctgcaactacaaaa |
214 |
Q |
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|||||||||| ||||| | |||||||| | ||| | |||| ||| ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
39747512 |
ctgatgatgtaaattgccttgatgatccagacttttcaattccagaagaatttgcagagaattcgatcacaacctctacaactacaaaa |
39747424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 39747322 - 39747274
Alignment:
| Q |
286 |
catctatgcacatcactttatttctttcacttatgtcatgattttgaat |
334 |
Q |
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| T |
39747322 |
catctatgctcatcactttatttctttaacttatgtcatgattttgaat |
39747274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 11632298 - 11632367
Alignment:
| Q |
29 |
aatagaaaagttaagagatgaagccattgagattgagaataaggtaatcaaagttggagatgctatgtca |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||||| |
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| T |
11632298 |
aatagaaaagttaagagatgaagccattgagattgaaaatgaagtgatcaaagttggagatgctatgtca |
11632367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 34681145 - 34681214
Alignment:
| Q |
29 |
aatagaaaagttaagagatgaagccattgagattgagaataaggtaatcaaagttggagatgctatgtca |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | || |||||||||||| || |||||||| |
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| T |
34681145 |
aatagaaaagttaagagatgaagccattgagattgagaatgaagttatcaaagttggaaatactatgtca |
34681214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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