View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_14 (Length: 451)
Name: NF20885_high_14
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 85 - 451
Target Start/End: Complemental strand, 42246348 - 42245980
Alignment:
| Q |
85 |
caattgtttctattaactaataa---atatccttaaaatacttgttagcaaaaccctaatattaattaaaaataaatttgccattactttgaaggtctct |
181 |
Q |
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| T |
42246348 |
caattgtttctattaattaataataaatatccttaaaatacttgttagcaaaaccctaacattaattaaaa-taaatttgccattactttgaaggtctct |
42246250 |
T |
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| Q |
182 |
tttgagatgaagggaagactgcttatgaaagttgatatggatgactacaaagaatatgactctaaccacaagaatgatcaagggaaagggaagccccacg |
281 |
Q |
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| T |
42246249 |
tttgagatgaagggaagactgcttatgaaagttgatacggatgactacaaagaatatgactctaaccacaagaatgatcaagggaaagggaagccccacg |
42246150 |
T |
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| Q |
282 |
gttggacttaacctaatgctagttgggttgctaataatatgttatactatattttaatggaataaattataattcaagccagcacttacaactataaaat |
381 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42246149 |
gttgaacttaacctaatgctagttgggttgctaataatatgttatactatattttaatggaataaattataattcaagccagcacttacaactataaaat |
42246050 |
T |
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| Q |
382 |
gttgaagaatcagaaatataagaaaagctggcggccaacgatttccttctggtactagttttaattttat |
451 |
Q |
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| T |
42246049 |
gctgaagaatcagaaatataagaaaagctggcggccaacgatttccttctgctactagttttaattttat |
42245980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 42246393 - 42246473
Alignment:
| Q |
5 |
aataaagaatcaattgaaatgcgtgctgcacatgataaatttaagcattttcaattaattaatgaacgaaaatactttacc |
85 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42246393 |
aataaaaaatcaattgaaatgcgtgctgcacatgataaatttaagcattttcaattaattaatgaacgaaaatactttacc |
42246473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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