View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_high_18 (Length: 425)
Name: NF20885_high_18
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 47729674 - 47729293
Alignment:
| Q |
15 |
tatgagtagcttggatagagttgaaggaagtttgtccgaagctcgagcctcaattcgagaagcaattctttcaaggaattacagtacttcaaggaggcgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47729674 |
tatgagtagcttggatagagttgaaggaagtttgtccgaagctcgagcctcaattcgagaagcaattctttcaaggaattacagtacttcaaggaggcgt |
47729575 |
T |
|
| Q |
115 |
gatgtttttgtcccaagagggtccatttacagaaatccatatgcttttcatcagttaagtttgagaaattcttctgaattaaaatttcaatgttttagtc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47729574 |
gatgtttttgtcccaagagggtccatttacagaaatccatatgcttttcatcagttaagtttgagaaattcttctgaattaaaatttcaatgttttagtc |
47729475 |
T |
|
| Q |
215 |
tttaaaaatggcactgttgcattcgcgactttgatattataaaaaattataatcaaatatagttagcatgactttgatactgcgaaaaatcatagtcaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47729474 |
tttaaaaatggcactgttgcattcgcgactttgatattataaaaaattataatcaaatatagttagcatgactttgatactgcgaaaaatcatagtcaaa |
47729375 |
T |
|
| Q |
315 |
tacagctaacgcaaccacgtaattgtgatgttgcaactactatagcggttgctgataacttttaaaacattggacatatata |
396 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47729374 |
tacagctaacgcaaccatgtaattgtgatgttgcaactactatagcggttgctgataacttttaaaacattggacatatata |
47729293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 47726760 - 47726704
Alignment:
| Q |
120 |
ttttgtcccaagagggtccatttacagaaatccatatgcttttcatcagttaagttt |
176 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
47726760 |
ttttgttccaaaagggtccatttacttgaatccacatgcttttcaccagttaagttt |
47726704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University