View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_20 (Length: 423)
Name: NF20885_high_20
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 369
Target Start/End: Complemental strand, 13658781 - 13658417
Alignment:
| Q |
5 |
caacaaatcataggcaaaccacaaaccacactctccaaagtagaattccatccaatatgtgtcaaaaaggcaccaattgctttgtgtgacaaaacttcct |
104 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13658781 |
caacatatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgacaaaacttcct |
13658682 |
T |
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| Q |
105 |
cttgtggaacccaccccacaatcatccctttctctttagtagtccgttcctcaagctccttcaatagtcctttttctcttaccatgtttggcctaatcac |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13658681 |
cttgtggaacccaccccacaatcatccctttctctttagtagtcccttcctcaagctccttcaatagtcctttttcttgtaccatgtttggcctaatcac |
13658582 |
T |
|
| Q |
205 |
ccacaaaaatggttttttgctattcaataaaccgtgccaaatctcaatgatttcttctcccctcattggggtgatgctaccaaagctaacatatacaacc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13658581 |
ccacaaaaatggttttttgctattcaataaaccgtgccaaatctcaatgatttcttctcccttcattggggtgatgctaccaaagctaacatatacaacc |
13658482 |
T |
|
| Q |
305 |
gatttcaacggttgagattcaagccatgtcatgcaagttctatccacttcgaagaaattgctctt |
369 |
Q |
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| T |
13658481 |
gatttcaacggttgagattcaagccatgtcatgcaagttctatccacttcgaagaaattgctctt |
13658417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 364
Target Start/End: Complemental strand, 13653308 - 13652949
Alignment:
| Q |
5 |
caacaaatcataggcaaaccacaaaccacactctccaaagtagaattccatccaatatgtgtcaaaaaggcaccaattgctttgtgtgacaaaacttcct |
104 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
13653308 |
caacaaatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcct |
13653209 |
T |
|
| Q |
105 |
cttgtggaacccaccccacaatcatccctttctctttagtagtccgttcctcaagctccttcaatagtcctttttctcttaccatgtttggcctaatcac |
204 |
Q |
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|||||||| ||||| ||||||||| |||||||| ||| |||||| ||||||||| || || | ||||| ||||||| |||||||||||| |||||||| |
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| T |
13653208 |
cttgtggagcccactccacaatcaaacctttctccttactagtcccttcctcaagttcttttattagtcttttttcttgtaccatgtttggtctaatcac |
13653109 |
T |
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| Q |
205 |
ccacaaaaatggttttttgctattcaataaaccgtgccaaatctcaatgatttcttctcccctcattggggtgatgctaccaaagctaacatatacaacc |
304 |
Q |
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|||||| |||| ||||||||| ||||| ||||||||||||| ||||| |||||||||| | |||||| ||| |||| |||||||||||||||||||| |
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| T |
13653108 |
ccacaagaatgcttttttgctgttcaacaaaccgtgccaaaactcaagtatttcttctctcgtcattgttgtggtgcttccaaagctaacatatacaact |
13653009 |
T |
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| Q |
305 |
gatttcaacggttgagattcaagccatgtcatgcaagttctatccacttcgaagaaattg |
364 |
Q |
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|| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |
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| T |
13653008 |
gacttcaacggttgagattcgagccatgtcatgcaggttctatccactttgaagaaattg |
13652949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 369
Target Start/End: Complemental strand, 13648253 - 13647889
Alignment:
| Q |
5 |
caacaaatcataggcaaaccacaaaccacactctccaaagtagaattccatccaatatgtgtcaaaaaggcaccaattgctttgtgtgacaaaacttcct |
104 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||| ||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
13648253 |
caacatatcataggcacaccacaaaccacactttccaaagttgaattccacccattatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcct |
13648154 |
T |
|
| Q |
105 |
cttgtggaacccaccccacaatcatccctttctctttagtagtccgttcctcaagctccttcaatagtcctttttctcttaccatgtttggcctaatcac |
204 |
Q |
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||||||| |||||||| ||||||| ||||| || ||| ||||| |||||||||||| | |||| |||||||||| ||||||||||||||||||||| |
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| T |
13648153 |
cttgtgggacccacccaacaatcaaacctttttccttacgagtcccttcctcaagctcacttaataatcctttttcttgtaccatgtttggcctaatcac |
13648054 |
T |
|
| Q |
205 |
ccacaaaaatggttttttgctattcaataaaccgtgccaaatctcaatgatttcttctcccctcattggggtgatgctaccaaagctaacatatacaacc |
304 |
Q |
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||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||| || |||| |||||||||||||||| ||| |
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| T |
13648053 |
ccataaaaactgttttttgctattcaataaaccatgccaaatctcaattatttcttctctcttcattggtgtagtgcttccaaagctaacatatataact |
13647954 |
T |
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| Q |
305 |
gatttcaacggttgagattcaagccatgtcatgcaagttctatccacttcgaagaaattgctctt |
369 |
Q |
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|||||||| |||||||| |||||||| | |||||| ||||||||||||| ||||||||||||||| |
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| T |
13647953 |
gatttcaatggttgagagtcaagccacgccatgcaggttctatccactttgaagaaattgctctt |
13647889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 20156862 - 20156911
Alignment:
| Q |
47 |
gaattccatccaatatgtgtcaaaaaggcaccaattgctttgtgtgacaa |
96 |
Q |
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|||||||||||| |||||||||||| ||||| |||||||| |||||||| |
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| T |
20156862 |
gaattccatccacaatgtgtcaaaaatgcacctattgctttatgtgacaa |
20156911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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