View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_24 (Length: 373)
Name: NF20885_high_24
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 52125454 - 52125094
Alignment:
| Q |
1 |
aacaaataagtcgtaaataacttgtttgatagatctagcttacatgcatttggtgattggtctttagtctggaatttggaggcaccattggtgctaaata |
100 |
Q |
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| T |
52125454 |
aacaaataagtcgtaaataacttgtttgatagatctagcttacatgcatttggtgattggtctttagtccggaatttggaggcaccattggtggtaaata |
52125355 |
T |
|
| Q |
101 |
atttcattcggagattgcttgctaactagagctaagct----tgtcacnnnnnnnggcactttgtccttaaaattgcatttgttgtggttcttatggtga |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52125354 |
atttcattcggagattgcttgctaactagagctaagctagcttgtcacaaaaaaaggcactttgtccttaaaattgcatttgttgtggttcttatggtga |
52125255 |
T |
|
| Q |
197 |
aaattattggcatctttttgttacttgtcgtattgctatagatacttgaaaataactcaaaatatgggatttgatagaaccgcatatttttcatgcccat |
296 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52125254 |
aaattcttggcatctttttgttacttgtcgtattgctatagatacttgaaaataactcaaaatatgggatttgatagaaccgcatatttttcatgcccat |
52125155 |
T |
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| Q |
297 |
ggaattatactatgaggagatatcctaacatgaacatgtcatattcattgatgaaacaatt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52125154 |
ggaattatactatgaggagatatcctaacatgaacatgtcatattcattgatgaaacaatt |
52125094 |
T |
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