View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_27 (Length: 355)
Name: NF20885_high_27
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 47841270 - 47841617
Alignment:
| Q |
1 |
aacttttagaaggatggaagagatttatcatcaattgcattcagcctattgccaattcaataatactagccctcctcaatctgaatgtttcagttattca |
100 |
Q |
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| T |
47841270 |
aacttttagaaggatggaagagatttatcatcaattgcattcagcctattgccaattcaataatactagccctcctcaatctgaatgtttcagttattca |
47841369 |
T |
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| Q |
101 |
ggggacatttcagaacgtgttcagagtcttcatactccaaaagatttagagacaggtttgtatctattcaatgctggtatggtatttacccttatattta |
200 |
Q |
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| T |
47841370 |
ggggacatttcagaacgtgttcagagtcttcatactccaaaagatttagagacaggtttgtatctattcaatgc-----tggtatttacccttatattta |
47841464 |
T |
|
| Q |
201 |
taattaaagatatgattgaaaatttgaca--------------atgttttaggcnnnnnnntcatgcaaccagaaatgtcatggccaattgttcgtcgat |
286 |
Q |
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| T |
47841465 |
taattaaagatatgattgaaaatttgacaatgtttttttaattatgttttaggcaaaaaaatcatgcaaccagaaatgtcatggccaattgttcgtcgat |
47841564 |
T |
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| Q |
287 |
agttcaattttgtagaaatcaatcatagacttgtaaattttatgagaatcatg |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47841565 |
agttcaattttgtagaaatcaatcatagacttgtaaattttatgagaatcatg |
47841617 |
T |
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