View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_34 (Length: 314)
Name: NF20885_high_34
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_34 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 37648163 - 37647850
Alignment:
| Q |
1 |
ccaattcacgggtagagactgttccataagcacaagcattcagagaagcatccaacacaaagggaacggcttccagaatatcccaggcaggcacttttag |
100 |
Q |
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| T |
37648163 |
ccaattcacgggtagagaccgttccataagcacaagcattcagagaagcatccaacacaaagggaacggcttccagaatatcccaggcaggcacttttag |
37648064 |
T |
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| Q |
101 |
tttcactaaagcatcatccaatgcagacccgaatcgagaagagctgatgcttcctaaggtcgtaggtgtcgaaggctcaaaaccatcatttaccttccta |
200 |
Q |
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| T |
37648063 |
tttcactaaagcatcatccaatgcagacccgaatcgagaagagctgatgcttcctaaggtcgtaggtgtcgaaggctcaaaaccaacatttaccttccta |
37647964 |
T |
|
| Q |
201 |
aacatcatccttagtagagcatcaacaatctgttgaacatgacctccaggcataaaaccagagtgggtcgaagcaatgcgttcttgatgttgtcgatgcc |
300 |
Q |
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| T |
37647963 |
aacatcatccttagtaaagcatcaacaatctgttgaacaggccctccaggcataagaccagagtgggtcgaagcaatgcgttcttgatgttgtcgatgcc |
37647864 |
T |
|
| Q |
301 |
aaaagtttagtttt |
314 |
Q |
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|||||||||||||| |
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| T |
37647863 |
aaaagtttagtttt |
37647850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 29685770 - 29686079
Alignment:
| Q |
5 |
ttcacgggtagagactgttccataagcacaagcattcagagaagcatccaacacaaagggaacggcttccagaatatcccaggcaggcacttttagtttc |
104 |
Q |
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|||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||| ||||||||||||| |
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| T |
29685770 |
ttcacgtgtagaaactcttccataagcacaagcattcagagaagcatccaacaaaaagggaacgacttccaggatatcaaaggcagacacttttagtttc |
29685869 |
T |
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| Q |
105 |
actaaagcatcatccaatgcagacccgaatcgagaagagctgatgcttcctaaggtcgtaggtgtcgaaggctcaaaaccatcatttaccttcctaaaca |
204 |
Q |
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| T |
29685870 |
actaaagcattatccaatcaagacccgaaactagaagagatgatgcttcctaaggtcataggtgtcaaaggctcagaagcaacatttaccttcctaaaca |
29685969 |
T |
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| Q |
205 |
tcatccttagtagagcatcaacaatctgttgaacatgacctccaggcataaaaccagagtgggtcgaagcaatgcgttcttgatgttgtcgatgccaaaa |
304 |
Q |
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| T |
29685970 |
tcatccttagtaaagcatcaacaatctgttgaacaggccctccaggcataagaccagagtgggtcgaagcaatgcgttcttgatgttgtcaatgccaaaa |
29686069 |
T |
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| Q |
305 |
gtttagtttt |
314 |
Q |
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|||||||||| |
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| T |
29686070 |
gtttagtttt |
29686079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 29687318 - 29687627
Alignment:
| Q |
5 |
ttcacgggtagagactgttccataagcacaagcattcagagaagcatccaacacaaagggaacggcttccagaatatcccaggcaggcacttttagtttc |
104 |
Q |
| |
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|||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||| ||||||||||||| |
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| T |
29687318 |
ttcacgtgtagaaactcttccataagcacaagcattcagagaagcatccaacataaagggaacgccttccaggatatctaaggcagacacttttagtttc |
29687417 |
T |
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| Q |
105 |
actaaagcatcatccaatgcagacccgaatcgagaagagctgatgcttcctaaggtcgtaggtgtcgaaggctcaaaaccatcatttaccttcctaaaca |
204 |
Q |
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|||||||||| ||||||| ||||||| | | ||||||| ||||||||||||||||| |||||||| |||||||| || || |||||||||||||||||| |
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| T |
29687418 |
actaaagcattatccaatctagacccggaactagaagagatgatgcttcctaaggtcataggtgtcaaaggctcagaagcaacatttaccttcctaaaca |
29687517 |
T |
|
| Q |
205 |
tcatccttagtagagcatcaacaatctgttgaacatgacctccaggcataaaaccagagtgggtcgaagcaatgcgttcttgatgttgtcgatgccaaaa |
304 |
Q |
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|||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29687518 |
tcatccttagtaaagcatcaacaatctgttgaacaggccctccaggcataagaccagagtgggtcgaagcaatgcgttcttgatgttgtcaatgccaaaa |
29687617 |
T |
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| Q |
305 |
gtttagtttt |
314 |
Q |
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|||||||||| |
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| T |
29687618 |
gtttagtttt |
29687627 |
T |
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