View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_39 (Length: 299)
Name: NF20885_high_39
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 12615774 - 12616000
Alignment:
| Q |
13 |
aaaataggggggaccaaataaaaactataacgatctaaagaaaatgaacaacaaaagaaattacatagccccacaattttccaaattattattcatatca |
112 |
Q |
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| T |
12615774 |
aaaataggggggaccaaatgaaaactataacgatctaaagaaaatgaacaacaaaagaaattacatagccccacaattttccaaattattattcatatca |
12615873 |
T |
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| Q |
113 |
tatttgttcaagacatgttgtcaccctgatt---nnnnnnncaagcagtttataccgtcattgttcatgata--gtatagtaaaccaagcatgcaataaa |
207 |
Q |
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| T |
12615874 |
tatttcttcaagacatgttgtcaccctgattaaaaaaaaaccaagcagtttataccgtcattgttcatgatagtgtatactaaaccaagcatgcaataaa |
12615973 |
T |
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| Q |
208 |
tgcaaaagatttggccaatgatatatt |
234 |
Q |
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| T |
12615974 |
tgcaaaagatttggccaatgatatatt |
12616000 |
T |
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