View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_40 (Length: 295)
Name: NF20885_high_40
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 32504895 - 32504633
Alignment:
| Q |
19 |
aggagcaacaagtaaataataataatttagcatcaagtcatcaaccaccttattgattaatttgattccgtccaaaaaacaaatttaattgcttttgcat |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32504895 |
aggagcaacaagtaaataataat---ttagcatcaagtcatcaaccaccttattgattaatttgattccgtccaaaaaacaaatttaattgcttttgcat |
32504799 |
T |
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| Q |
119 |
gtgaaaattgtacaggatacggtccattgaaatgtataagattggtgtgtattaatatcatatcattctcttcactcttcagagatcaaaccggcaccaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32504798 |
gtgaaaattgtacaggatacggtccattgaaatgtataagattggtgtgtattaatatcatatcattctcttcactcttcagagatcaaaccggcaccaa |
32504699 |
T |
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| Q |
219 |
catgcattatggagctgtcctactctcaaacacgaatttaaggcaggcattttgttcttctttctt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32504698 |
catgcattatggagctgtcctactctcaaacacgaatttaaggcaggcattttgttcttctttctt |
32504633 |
T |
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