View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_45 (Length: 279)
Name: NF20885_high_45
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_45 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 45546488 - 45546223
Alignment:
| Q |
14 |
gaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggacatgac |
113 |
Q |
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| T |
45546488 |
gaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggacatgac |
45546389 |
T |
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| Q |
114 |
actgaaactcagcatattcctgatgatgatggtgacttggatgaggataaaccaatagttcaagaccnnnnnnntcgtgaagtaccaagtatgttctttt |
213 |
Q |
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| T |
45546388 |
actgaaactcagcatattcctgatgatgatggtgacttggatgaggataaaccaatagttcaagaccaaaaaaatcgtgaagtaccaagtatgttctttt |
45546289 |
T |
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| Q |
214 |
ctacattctttatgcaattagattacgatagaattcaagggactactagtacatcccatattctct |
279 |
Q |
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| T |
45546288 |
ctacattctttatgcaattagattatgatagaattcaagggactactagtacatcccatattctct |
45546223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 45551723 - 45551487
Alignment:
| Q |
18 |
tctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggacatgacactg |
117 |
Q |
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| T |
45551723 |
tctgttctgaataaggtgaaggcaaaggctaagaaaattaaggacacaattaaaaaacacggtcaacaagtacttgatcatggtaatggacataacaatg |
45551624 |
T |
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| Q |
118 |
aaactcagcatattcctgatgatgatggtgacttggatgaggataaaccaatagttcaagaccnnnnnnntcgtgaagtaccaagtatgttcttttctac |
217 |
Q |
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| T |
45551623 |
aaattcagcatactc---atgatgatatcgacttggatgaggataagcaactggttcaagacccacaagatcatcaagcaccaagtatgttcttttctac |
45551527 |
T |
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| Q |
218 |
attctttatgcaattagattacgatagaattcaagggactac |
259 |
Q |
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| T |
45551526 |
attatt--tgcaattagattatgctagaattcaagggactac |
45551487 |
T |
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