View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_high_46 (Length: 277)
Name: NF20885_high_46
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 8528482 - 8528742
Alignment:
| Q |
1 |
aaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgttgtgagaa |
97 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528482 |
aaaaatataacaaatatatacaacatcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgttgtgagaa |
8528581 |
T |
|
| Q |
98 |
tatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacaca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528582 |
tatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacaca |
8528681 |
T |
|
| Q |
198 |
agtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatc |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528682 |
agtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatc |
8528742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 258
Target Start/End: Original strand, 8535183 - 8535282
Alignment:
| Q |
161 |
agtttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgac-ttgtaaggaagcatc |
258 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| |||| |||||||||||||| || ||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
8535183 |
agtttaaaatataactggtaacataggaaacttacagaagttcctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatc |
8535282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 8535053 - 8535122
Alignment:
| Q |
5 |
ttataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaac |
71 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
8535053 |
ttataacaaatataaacaacttcataaatatattagttgtaaaagcaaatgattgacgaaacatcacaac |
8535122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 9075109 - 9075019
Alignment:
| Q |
164 |
ttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaa |
253 |
Q |
| |
|
|||||||||||||| ||||||| |||||| || | |||||||||||| |||| || ||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
9075109 |
ttaaaatataagtggtaacataagaaactcactcgagtccctttgaaaactcatcttatgattaaaattaattactatgacttgtacggaa |
9075019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 9442632 - 9442903
Alignment:
| Q |
1 |
aaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctc-----------caacatgt |
86 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
9442632 |
aaaaatataacaaatatatacaacatcataaatatattagctgcgaaagcaaatgattgacgaaacatcacaacctttctccaacatgtctccaacatgt |
9442731 |
T |
|
| Q |
87 |
cgttgtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacatagg |
186 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442732 |
cgttgtgagaatatatcaaccgaagtaacctaacaacatgttttcttttctccaaatggaatggcaaaatagtaagtttaaaatataagtgtaacatagg |
9442831 |
T |
|
| Q |
187 |
aaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9442832 |
aaacttacacaagtccctttgaatactcatctcatgattacaatcaattactatgacttgtaaagaagcatc |
9442903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University