View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_48 (Length: 266)
Name: NF20885_high_48
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 26336096 - 26335882
Alignment:
| Q |
31 |
cagagacataagcaatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
130 |
Q |
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| T |
26336096 |
cagagacataagcaatagaattggtgatatctgagagagtatagacatttttttggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
26335997 |
T |
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| Q |
131 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26335996 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
26335897 |
T |
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| Q |
231 |
atgattggtgatctc |
245 |
Q |
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||||||||||||||| |
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| T |
26335896 |
atgattggtgatctc |
26335882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 26323077 - 26322899
Alignment:
| Q |
33 |
gagacataagcaatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtcatg |
132 |
Q |
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|||||||||||||||| ||| ||| |||||| ||||||||||| | |||| ||||||||||||||| ||||||| |||||||||||||| || |
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| T |
26323077 |
gagacataagcaatagctttgctgagatctgaaggagtatagacattttcttgaatgagttggttgaaggaatcgatttgggctgtcatatttggtcctg |
26322978 |
T |
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| Q |
133 |
aagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgtt |
211 |
Q |
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| T |
26322977 |
aagtaaatgtatcaaatacacctgtgccaccatatgcaaagttcatcccatacttcaaataatgtttagacacaatgtt |
26322899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 242
Target Start/End: Complemental strand, 26328385 - 26328174
Alignment:
| Q |
31 |
cagagacataagcaatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
130 |
Q |
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||||||||||||| ||||| ||||||||||||||| |||| || ||| | |||| || | | ||||||| ||||| ||||||| |||||||| |
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| T |
26328385 |
cagagacataagctatagatttggtgatatctgagggagtgtatacattttcttgaatgagtttgattaaggaattgatttgtgttgtcacatttggtcc |
26328286 |
T |
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| Q |
131 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
230 |
Q |
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|| |||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| | || ||| |||||| |||||| |
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| T |
26328285 |
tgtagaagatatttcaaatacacctgtaccaccataggcaaagttcatcccatacttcaaatcatgcttaggcactgtattagtattccataaattgtga |
26328186 |
T |
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| Q |
231 |
atgattggtgat |
242 |
Q |
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| T |
26328185 |
gtgattggtgat |
26328174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 42224133 - 42224184
Alignment:
| Q |
141 |
gtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaat |
192 |
Q |
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|||||||| ||||| ||||||||| ||||||||||||| ||||| ||||||| |
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| T |
42224133 |
gtatcaaacacaccagtaccaccaaatgcaaagttcattccatatttcaaat |
42224184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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