View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_high_68 (Length: 235)
Name: NF20885_high_68
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_68 |
 | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38176590 - 38176369
Alignment:
| Q |
1 |
aggcaggttcataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176590 |
aggcaggttcataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttgga |
38176491 |
T |
|
| Q |
101 |
cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176490 |
cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca |
38176391 |
T |
|
| Q |
201 |
ttgatgactgcaggtcactatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38176390 |
ttgatgactgcaggtcactatt |
38176369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 41192299 - 41192460
Alignment:
| Q |
11 |
ataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaat |
110 |
Q |
| |
|
|||||||||||| |||| ||||||||||| || || |||| |||||| |||||||| || ||| | ||| | |||||||||| |||||||| | || |
|
|
| T |
41192299 |
ataaaagctgctgcaaaatggtatgaaggcaatcatcttccttaagaaggtgaagcagtgggtttatgtgatactattttgtggcatggacagtcgggat |
41192398 |
T |
|
| Q |
111 |
tatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaat |
172 |
Q |
| |
|
||||| | |||| | ||||||||||||||||| ||| | || |||||||||||||||||| |
|
|
| T |
41192399 |
tatcataaatgcacattgaactagattgtaaacttgtgattgagagcatatatgataagaat |
41192460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 42415154 - 42415229
Alignment:
| Q |
126 |
tagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcat |
201 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| | ||||| ||||| ||| || || || |||||||||||||| |
|
|
| T |
42415154 |
tagaactagattgcaaactagtggttgatagcatttttgataggaatagcaatcaagcggagtttggtagtatcat |
42415229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 5572460 - 5572393
Alignment:
| Q |
74 |
ttacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaa |
141 |
Q |
| |
|
|||||| |||||||| | ||||||||||| || | | ||||||||||||| || |||||||||||||| |
|
|
| T |
5572460 |
ttacgcaatgccattatttggcttggacatttgggactatcaaatgtgcattttgaactagattgtaa |
5572393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1527031 - 1527252
Alignment:
| Q |
1 |
aggcaggttcataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttgga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1527031 |
aggcaggttcttaaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttgga |
1527130 |
T |
|
| Q |
101 |
cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1527131 |
cagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatca |
1527230 |
T |
|
| Q |
201 |
ttgatgactgcaggtcactatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1527231 |
ttgatgactgcaggtcactatt |
1527252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 4319067 - 4318849
Alignment:
| Q |
3 |
gcaggttcataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggaca |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4319067 |
gcaggttcataaaagctgctacaacttggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggaca |
4318968 |
T |
|
| Q |
103 |
gttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcatt |
202 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4318967 |
gttaaaattatcaaatgtgcaattagaactagattgtaaactagt-gttgatagcatatatgataagaataacaaccaggcagaatttggtagtatcatt |
4318869 |
T |
|
| Q |
203 |
gatgactgcaggtcactatt |
222 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4318868 |
gatgactgcaggtcactatt |
4318849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 28626693 - 28626483
Alignment:
| Q |
12 |
taaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaatt |
111 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
28626693 |
taaaagctgctacaacttggtatgaaggttgtctccctcctcaagaagcggaagcagttggattacgtgatgccattttgtggcttggatagttagaatt |
28626594 |
T |
|
| Q |
112 |
atcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactgc |
211 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
28626593 |
atcaaatgtgctaatagaactagattgtaaactagtggttgatagcatatatgataagaataactaccaggaagaatttggtagtatcatcaatgactgc |
28626494 |
T |
|
| Q |
212 |
aggtcactatt |
222 |
Q |
| |
|
|||| |||||| |
|
|
| T |
28626493 |
aggtaactatt |
28626483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 6409453 - 6409581
Alignment:
| Q |
94 |
gcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6409453 |
gcttggacagttagaattatcaaatgtgaaaatagaactagattgtaaactagtggttgatagtatatatgataagaataacaaccaggtagaatttggt |
6409552 |
T |
|
| Q |
194 |
agtatcattgatgactgcaggtcactatt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6409553 |
agtatcattgatgactgcaggtcactatt |
6409581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 18977526 - 18977345
Alignment:
| Q |
11 |
ataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaat |
110 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| |||||||||||| ||||| || || ||||| ||||| |||||||||||||||||||| | || |
|
|
| T |
18977526 |
ataaaggctgctacaaattggtacgaaggaaatcctcttcctcaagaagctgaagcggtgggtttacgtgatgctattttgtggcttggacagttgggat |
18977427 |
T |
|
| Q |
111 |
tatcaaatgtgca-attagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttgg |
192 |
Q |
| |
|
||| ||||||| |||| ||||||||||||| |||||||| |||||||||| |||||||||||| ||||| || |||||||| |
|
|
| T |
18977426 |
tattggatgtgcacatta-aactagattgtaagctagtggttgatagcatatgtgataagaataataaccaagccgaatttgg |
18977345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 34212544 - 34212734
Alignment:
| Q |
11 |
ataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaat |
110 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||| |||||||||||| ||||| || || ||||| |||| |||||||||||||||||||| | || |
|
|
| T |
34212544 |
ataaaggctgctacaaattggtacaaaggaaatcctcttcctcaagaagctgaagcggtgggtttacgtgatgttattttgtggcttggacagttgggat |
34212643 |
T |
|
| Q |
111 |
tatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcat |
201 |
Q |
| |
|
||| ||||||| | |||||||||||||| |||||||| |||||||||| |||||||||||| ||||| | |||||||| | |||||| |
|
|
| T |
34212644 |
tattggatgtgcacattgaactagattgtaagctagtggttgatagcatatgtgataagaataataaccaaaccgaatttggcaatatcat |
34212734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 46342742 - 46342922
Alignment:
| Q |
11 |
ataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaat |
110 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||| | |||||||||| |||||||| |||| ||||||||| || |||||||||||||| |||| || |
|
|
| T |
46342742 |
ataaaagctgctacaaattgatacgaaggaaatcctctttctcaagaagctgaagcagtgggatcacgcgatgctatcttgtggcttggacaattaggat |
46342841 |
T |
|
| Q |
111 |
tatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttg |
191 |
Q |
| |
|
||| | ||||||| | |||||||||||||||| |||||| |||||||||| |||||||||||| ||||| || ||||||| |
|
|
| T |
46342842 |
tattagatgtgcacattgaactagattgtaaacaagtggttgatagcatatgtgataagaataataaccaagccgaatttg |
46342922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 44586007 - 44585890
Alignment:
| Q |
74 |
ttacgcgatgccattttgtggcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaata |
173 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||| | ||||||| ||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
44586007 |
ttacgcaatgctattttgtggctttgacagttgggattatcatatgtgcacattgaactagattgtaaactagtggttgatagcatatgtgataagaata |
44585908 |
T |
|
| Q |
174 |
acaaccaggcagaatttg |
191 |
Q |
| |
|
| ||||| || ||||||| |
|
|
| T |
44585907 |
ataaccaagctgaatttg |
44585890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 22497983 - 22497793
Alignment:
| Q |
11 |
ataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaat |
110 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| |||||||||||| ||||| || || ||||| ||||| ||||||||||||||| |||| | || |
|
|
| T |
22497983 |
ataaaggctgctacaaattggtacgaaggaaatcctcttcctcaagaagctgaagcggtgggtttacgtgatgctattttgtggcttggagagttgggat |
22497884 |
T |
|
| Q |
111 |
tatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcat |
201 |
Q |
| |
|
|||| ||||||| | |||||||||||||| ||||||| |||||||||| |||||||||||| ||||| || |||||||| | |||||| |
|
|
| T |
22497883 |
tatcggatgtgcacattgaactagattgtaagatagtggttgatagcatatgtgataagaataataaccaagccgaatttggcaatatcat |
22497793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 8618656 - 8618449
Alignment:
| Q |
11 |
ataaaagctgctacaaattggtatgaaggttgtcctcctcctcaagaagcggaagcagttggattacgcgatgccattttgtggcttggacagttagaat |
110 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| |||||||||||| ||||| | || ||||| ||||| ||||| |||||||||||||| | || |
|
|
| T |
8618656 |
ataaaggctgctacaaattggtacgaaggaaatcctc-tcctcaagaagctgaagcgctgggtttacgtgatgctattttatggcttggacagttgggat |
8618558 |
T |
|
| Q |
111 |
tatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggtagtatcattgatgactg |
210 |
Q |
| |
|
||||| ||||||| | |||||||||||||| |||||||| |||||||||| |||||||||||| ||||| || ||||||| | |||||| | ||| || |
|
|
| T |
8618557 |
tatcagatgtgcacatcgaactagattgtaagctagtggttgatagcatatgtgataagaataataaccaagccaaatttggcaatatcatagctgattg |
8618458 |
T |
|
| Q |
211 |
caggtcact |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
8618457 |
taggtcact |
8618449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 15118 - 15186
Alignment:
| Q |
126 |
tagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggta |
194 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| | ||||| ||||| ||| || || || ||||||| |
|
|
| T |
15118 |
tagaactagattgcaaactagtggttgatagcatttttgataggaatagcaatcaagcggagtttggta |
15186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University