View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_high_76 (Length: 212)

Name: NF20885_high_76
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_high_76
NF20885_high_76
[»] chr5 (9 HSPs)
chr5 (17-138)||(39144429-39144550)
chr5 (17-145)||(41697309-41697437)
chr5 (31-148)||(19555193-19555310)
chr5 (17-145)||(4921453-4921581)
chr5 (29-136)||(43229188-43229295)
chr5 (172-212)||(2695049-2695088)
chr5 (172-212)||(12909971-12910013)
chr5 (172-212)||(13710980-13711022)
chr5 (175-212)||(33696244-33696283)
[»] chr6 (5 HSPs)
chr6 (17-150)||(34516302-34516435)
chr6 (68-142)||(6271710-6271784)
chr6 (17-143)||(13201432-13201546)
chr6 (31-148)||(24167220-24167337)
chr6 (173-212)||(4898076-4898117)
[»] chr4 (11 HSPs)
chr4 (17-150)||(10310372-10310505)
chr4 (17-141)||(36119521-36119645)
chr4 (17-147)||(29696408-29696538)
chr4 (56-145)||(23544135-23544224)
chr4 (17-145)||(54681807-54681935)
chr4 (31-145)||(50303478-50303592)
chr4 (68-143)||(31518413-31518488)
chr4 (31-145)||(50302204-50302318)
chr4 (17-145)||(48035406-48035534)
chr4 (172-212)||(6946848-6946890)
chr4 (172-212)||(15725387-15725429)
[»] chr2 (7 HSPs)
chr2 (17-142)||(29078375-29078500)
chr2 (17-145)||(31642480-31642608)
chr2 (31-148)||(3601791-3601908)
chr2 (31-148)||(13481441-13481558)
chr2 (17-145)||(6191795-6191923)
chr2 (172-212)||(768751-768793)
chr2 (172-212)||(13002228-13002270)
[»] chr7 (7 HSPs)
chr7 (17-145)||(39878607-39878735)
chr7 (31-148)||(41084997-41085114)
chr7 (46-148)||(22491696-22491798)
chr7 (17-143)||(25750167-25750294)
chr7 (17-145)||(33055473-33055601)
chr7 (172-212)||(27168205-27168247)
chr7 (31-148)||(29272758-29272875)
[»] chr3 (6 HSPs)
chr3 (17-145)||(10723669-10723797)
chr3 (172-212)||(3800393-3800435)
chr3 (172-212)||(13349331-13349373)
chr3 (31-148)||(30675649-30675766)
chr3 (54-143)||(31543461-31543550)
chr3 (17-142)||(34706389-34706514)
[»] chr8 (10 HSPs)
chr8 (17-151)||(16220727-16220862)
chr8 (31-148)||(39566024-39566141)
chr8 (54-140)||(41313025-41313111)
chr8 (68-145)||(26724676-26724753)
chr8 (172-212)||(13269440-13269482)
chr8 (172-212)||(30207116-30207158)
chr8 (172-212)||(39922480-39922522)
chr8 (68-145)||(30203230-30203307)
chr8 (174-212)||(34970004-34970044)
chr8 (36-148)||(36265839-36265951)
[»] chr1 (7 HSPs)
chr1 (52-145)||(34079910-34080003)
chr1 (31-148)||(14592049-14592166)
chr1 (17-79)||(25018237-25018299)
chr1 (19-145)||(46599049-46599175)
chr1 (173-212)||(48643966-48644007)
chr1 (174-212)||(3273539-3273579)
chr1 (172-201)||(10368034-10368063)
[»] scaffold0294 (1 HSPs)
scaffold0294 (31-148)||(2121-2238)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 39144429 - 39144550
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||| |||| || |||||||||||||||||| ||||||||||||    
T  39144429 aagattatatgagaaaagaaaaagaatagaaagtaaagggattgttttggttgtttggtacaaaagaaagtggaatagaaaattaaaggaaagaaagatc 39144528  T
Q  117 catatttattaattgacataaa 138  Q
    ||||||||||||||| ||||||    
T  39144529 catatttattaattggcataaa 39144550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 41697309 - 41697437
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||||||||||| ||| | |||| |||||| ||| |||||| |||||||||| ||| || ||  | || ||| ||||| |||||||||||     
T  41697309 aagattgtatgagaaaagaaagagagtgaaaaataagggaattgttttggttgtttggtattaaagaaagtaaagtaaaaagttaaaggaaagaaagatt 41697408  T
Q  117 catatttattaattgacataaataccctt 145  Q
    |||||||||||| ||||||||||| ||||    
T  41697409 catatttattaactgacataaatatcctt 41697437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 19555310 - 19555193
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||||||| || ||||||||  |||| |||||| |||||||||||||| || |||||||||||| || || ||||||||||   | ||||| |||||    
T  19555310 aaagaaaaagagtagaaagtaagaagattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagacataaatttagtaatt 19555211  T
Q  131 gacataaatacccttaaa 148  Q
    |||||||| | |||||||    
T  19555210 gacataaaaatccttaaa 19555193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 4921581 - 4921453
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||||||||||| ||| |  ||| | |||||||| |||||| |||||||||| ||| || ||  | || ||| ||||| |||||||||||     
T  4921581 aagattgtatgagaaaagaaagagagtggaaaatgaggggattgttttggttgtttggtattaaagaaagtaaagtaaaaagttaaaggaaagaaagatt 4921482  T
Q  117 catatttattaattgacataaataccctt 145  Q
    |||||||||||| ||||||||||| ||||    
T  4921481 catatttattaactgacataaatatcctt 4921453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 43229188 - 43229295
Alignment:
Q  29 gaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaa 128  Q
    |||||||| |||| || |||||||| ||||| |||| | |||||||||||| | || |||||||||||| || || |||| ||||| | | ||||| |||    
T  43229188 gaaaagaagaagagtagaaagtaagaggattgttttagttgtttggtataagagaaagtggaatagaaagttgaaggaaacaaagacctaaatttagtaa 43229287  T
Q  129 ttgacata 136  Q
    ||||||||    
T  43229288 ttgacata 43229295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 2695049 - 2695088
Alignment:
Q  172 gggtttgttaggatacacactagtttttattaaggtgtgtt 212  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  2695049 gggtttgttaggatac-cactagtttttattaaggtgtgtt 2695088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 12909971 - 12910013
Alignment:
Q  172 gggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  12909971 gggtttgttaggatacacccactagtttttattaaggtgtgtt 12910013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 13710980 - 13711022
Alignment:
Q  172 gggtttgttaggataca--cactagtttttattaaggtgtgtt 212  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  13710980 gggtttgttaggatacatccactagtttttattaaggtgtgtt 13711022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 33696283 - 33696244
Alignment:
Q  175 tttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  33696283 tttgttaggatacacccactagtttttattaaggtgtgtt 33696244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 34516435 - 34516302
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    ||||||||||||| |||||||||||||| ||||| || ||||| |||||| |||||||||||||| || ||||||| |||| ||||| ||||||||||||    
T  34516435 aagattatatgaggaaagaaaaagaatagaaagtgagaggattgttttggttgtttggtataaaagaaagtggaatggaaagttaaaggaaagaaagatc 34516336  T
Q  117 catatttattaattgacataaatacccttaaaga 150  Q
    ||||||||||| ||||||||||||||||| ||||    
T  34516335 catatttattagttgacataaatacccttgaaga 34516302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 6271784 - 6271710
Alignment:
Q  68 tgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacataaatacc 142  Q
    |||||||| ||||| || ||| | ||||||||| || |||||||||||| |||||||||||||||||||||||||    
T  6271784 tgtttggtttaaaagaaagtgaagtagaaaattgaaggaaagaaagatctatatttattaattgacataaatacc 6271710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 13201546 - 13201432
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    ||||||||| ||| |||||||||||||| | |||||| ||||| |||||  |||||||||||||            ||||| || || |||||||||||     
T  13201546 aagattataagaggaaagaaaaagaatagagagtaagaggattgttttgattgtttggtataaa------------agaaagttgaaggaaagaaagata 13201459  T
Q  117 catatttattaattgacataaataccc 143  Q
     ||||||||||||||||||||||||||    
T  13201458 tatatttattaattgacataaataccc 13201432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 24167337 - 24167220
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||| ||| || ||||||||  ||||||||||| ||||||||| || | ||  ||||||||||| ||  | ||||||||||   | ||||| |||||    
T  24167337 aaagaaagagagtagaaagtaagatgattattttggttgtttggtacaagagaaactggaatagaaagttggaggaaagaaagacataaatttagtaatt 24167238  T
Q  131 gacataaatacccttaaa 148  Q
    ||||| ||||||||||||    
T  24167237 gacattaatacccttaaa 24167220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 4898076 - 4898117
Alignment:
Q  173 ggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  4898076 ggtttgttaggatacacccactagtttttattaaggtgtgtt 4898117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 10310505 - 10310372
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    ||||||| ||||| ||||||||| |||| ||||| |||||||| |||||| |||||||||||||| || |||||||||||| || || ||||||||||||    
T  10310505 aagattaaatgaggaaagaaaaaaaatagaaagtgaggggattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagatc 10310406  T
Q  117 catatttattaattgacataaatacccttaaaga 150  Q
    ||||||| ||||||||||||||||||||| ||||    
T  10310405 catattttttaattgacataaatacccttgaaga 10310372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 36119645 - 36119521
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    ||||||||||||| |||||||||||||| ||| | || ||||| |||||| |||||||||||||| || |||||||||||| || || |||||||||||     
T  36119645 aagattatatgaggaaagaaaaagaatagaaaatgagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagata 36119546  T
Q  117 catatttattaattgacataaatac 141  Q
     ||||||||||||||||||||||||    
T  36119545 tatatttattaattgacataaatac 36119521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 29696538 - 29696408
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||  ||||||||||| || ||||| ||| |||| |||||| |||||||||| ||| || ||| ||||||||  | || ||||||||||||    
T  29696538 aagattgtatgaagaaagaaaaagagtagaaagtgaggagattgttttggttgtttggtatgaaagaaagtgaaatagaaaggttaaggaaagaaagatc 29696439  T
Q  117 catatttattaattgacataaatacccttaa 147  Q
     ||||||| ||||||||| ||||||||||||    
T  29696438 tatatttaataattgacaaaaatacccttaa 29696408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 23544135 - 23544224
Alignment:
Q  56 gattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacataaataccctt 145  Q
    |||| |||||| |||||||||||||| || |||||||||||| || || |||||||||||  ||||||||||||| ||||||||||||||    
T  23544135 gattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagatatatatttattaattaacataaataccctt 23544224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 54681807 - 54681935
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||| ||||||| |||  | ||||| |||||||| |||| | |||||||||||| | || ||||||||||||||| || ||| |||| |||    
T  54681807 aagattgtatgaggaaagaaagagaggagaaagtgaggggattgttttagttgtttggtataatagaaagtggaatagaaaattgaaggaaggaaaaatc 54681906  T
Q  117 catatttattaattgacataaataccctt 145  Q
     |||| || ||||||||||||||||||||    
T  54681907 tatatatagtaattgacataaataccctt 54681935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 50303592 - 50303478
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||||||| || ||||| |||||||| |||||| |||||||||||||  || ||  ||||||||  | || |||||||||||| ||||||| |||||    
T  50303592 aaagaaaaagagtagaaagtgaggggattgttttggttgtttggtataaaggaaagtaaaatagaaaggttaaagaaagaaagatctatatttaataatt 50303493  T
Q  131 gacataaataccctt 145  Q
    |||| ||||||||||    
T  50303492 gacaaaaataccctt 50303478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 31518413 - 31518488
Alignment:
Q  68 tgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacataaataccc 143  Q
    |||||||||||| |||| ||||| |||||| | ||| |||||||||||| |||||| |||||||||||||||||||    
T  31518413 tgtttggtataagataaagtggattagaaagtgaaaggaaagaaagatctatattttttaattgacataaataccc 31518488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 50302318 - 50302204
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||||||| || ||||| |||||||| |||||| |||||||||||||  || ||  ||||||||  | || |||||||| ||| ||||||| |||||    
T  50302318 aaagaaaaagagtagaaagtgaggggattgttttggttgtttggtataaaggaaagtaaaatagaaaggttaaagaaagaaatatctatatttaataatt 50302219  T
Q  131 gacataaataccctt 145  Q
    |||| ||||||||||    
T  50302218 gacaaaaataccctt 50302204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 48035406 - 48035534
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||| |||||||| || || ||||| ||||||||||||||| ||||| |||||| | || ||||| | |||| ||  | ||||||||||||    
T  48035406 aagattgtatgaggaaagaaaaggagtagaaagtgaggggattattttggttgtttcgtataagagaaagtggattggaaagttggaggaaagaaagatc 48035505  T
Q  117 catatttattaattgacataaataccctt 145  Q
     |||  |  ||||||||||||||||||||    
T  48035506 tataaattataattgacataaataccctt 48035534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 6946890 - 6946848
Alignment:
Q  172 gggtttgttaggataca--cactagtttttattaaggtgtgtt 212  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  6946890 gggtttgttaggatacatccactagtttttattaaggtgtgtt 6946848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 15725429 - 15725387
Alignment:
Q  172 gggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  15725429 gggtttgttaggatacacccactagtttttattaaggtgtgtt 15725387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 29078375 - 29078500
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    ||||||| |||||||||||||| ||||| ||||| |||||||| |||||| |||||||||||||| || |||||||||||| || || ||||||||||||    
T  29078375 aagattaaatgagaaaagaaaaggaatagaaagtgaggggattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagatc 29078474  T
Q  117 catatttattaattgacataaatacc 142  Q
    ||||||| ||||||||||||||||||    
T  29078475 catattttttaattgacataaatacc 29078500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 31642608 - 31642480
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||||||| ||| ||| |  ||||| |  ||||| |||||| |||||||||||||| || ||  | |||||| || || ||||||||||||    
T  31642608 aagattgtatgagaaaataaagagagtggaaagtgaaaggattgttttggttgtttggtataaaagaaagtaaagtagaaagttgaaggaaagaaagatc 31642509  T
Q  117 catatttattaattgacataaataccctt 145  Q
     ||||||||| ||||||||||||||||||    
T  31642508 tatatttattgattgacataaataccctt 31642480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 3601791 - 3601908
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||||||| || ||||| || ||||| |||||| |||||| || |||| || ||||| ||||||||| || |||||||| |   | ||||  |||||    
T  3601791 aaagaaaaagagtagaaagtgagaggattgttttggttgtttgatacaaaagaaagtggagtagaaaattgaaggaaagaaaaacatacatttggtaatt 3601890  T
Q  131 gacataaatacccttaaa 148  Q
    ||||||||||||||||||    
T  3601891 gacataaatacccttaaa 3601908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 13481441 - 13481558
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||||||| || ||||| || ||||| |||||| ||||||||| ||   || |||||||||||| ||  | |||||||||||| ||||||  |||||    
T  13481441 aaagaaaaagagtagaaagtgagaggattgttttggttgtttggtacaagggaaagtggaatagaaagttggaggaaagaaagatctatattttctaatt 13481540  T
Q  131 gacataaatacccttaaa 148  Q
    ||||||| | ||||||||    
T  13481541 gacataattgcccttaaa 13481558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 6191795 - 6191923
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    ||||||||||||| |||||| |||| |  ||||| || ||||| |||||| |||||||| ||| | || ||||| || ||| ||  | ||||||| ||||    
T  6191795 aagattatatgaggaaagaagaagagtggaaagtgagaggattgttttggttgtttggtttaagagaaagtggattaaaaagtttgaggaaagaatgatc 6191894  T
Q  117 catatttattaattgacataaataccctt 145  Q
     || |||| ||||||||||||| ||||||    
T  6191895 tatttttagtaattgacataaacaccctt 6191923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 768793 - 768751
Alignment:
Q  172 gggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  768793 gggtttgttaggatacacccactagtttttattaaggtgtgtt 768751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 13002270 - 13002228
Alignment:
Q  172 gggtttgttaggataca--cactagtttttattaaggtgtgtt 212  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  13002270 gggtttgttaggatacatccactagtttttattaaggtgtgtt 13002228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 39878607 - 39878735
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    ||||||||||||| |||||||||||||| ||| | || ||||| |||||| |||||||||||||| ||  ||||||||||| || || |||||||||||     
T  39878607 aagattatatgaggaaagaaaaagaatagaaaatgagaggattgttttggttgtttggtataaaagaaaatggaatagaaagttgaaggaaagaaagata 39878706  T
Q  117 catatttattaattgacataaataccctt 145  Q
     ||||||||||||||||||||||||||||    
T  39878707 tatatttattaattgacataaataccctt 39878735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 41084997 - 41085114
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||||||| || |||||||| |||||||||||| |||||||||||| | || |||||||||||| ||  | ||||||||||   | ||||| ||||     
T  41084997 aaagaaaaagagtagaaagtaagaggattattttggttgtttggtataagagaaagtggaatagaaagttggaggaaagaaagacttaaatttagtaatc 41085096  T
Q  131 gacataaatacccttaaa 148  Q
    |||||||| |||||||||    
T  41085097 gacataaaaacccttaaa 41085114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 22491798 - 22491696
Alignment:
Q  46 aaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacataaataccctt 145  Q
    |||||||| ||||| |||||| ||||||||| || | || ||||| |||||| || || |||||||||||| | || || |||||||||| |||||||||    
T  22491798 aaagtaagaggattgttttggttgtttggtacaagagaaagtggagtagaaagtttaaggaaagaaagatctaaatgtagtaattgacattaataccctt 22491699  T
Q  146 aaa 148  Q
    |||    
T  22491698 aaa 22491696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 25750294 - 25750167
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||| ||||||||||| || || || ||||||||||||||| |||||||||||| | || || || | || | ||||| |||||||||||     
T  25750294 aagattgtatgaggaaagaaaaagagtagaatgtgaggggattattttggttgtttggtataagagaaagtagagtggatagttaaaagaaagaaagata 25750195  T
Q  117 cat-atttattaattgacataaataccc 143  Q
     || | | || |||||||||||||||||    
T  25750194 tataaatgataaattgacataaataccc 25750167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 33055601 - 33055473
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||| |||| |||||| || ||||| ||  |||| |||| | |||||||||||| | || ||| | |||||  |||||  |||||||||||    
T  33055601 aagattgtatgaggaaagtaaaagagtagaaagtgagatgattgttttagttgtttggtataagagaaagtgaagtagaatgttaaagaaaagaaagatc 33055502  T
Q  117 catatttattaattgacataaataccctt 145  Q
     ||||||| ||||||||  ||||||||||    
T  33055501 tatatttaataattgactaaaataccctt 33055473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 27168205 - 27168247
Alignment:
Q  172 gggtttgttaggataca--cactagtttttattaaggtgtgtt 212  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  27168205 gggtttgttaggatacatccactagtttttattaaggtgtgtt 27168247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 29272758 - 29272875
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||| ||| ||||||| ||| ||||| |||||| ||||||||| || | || || ||||| ||| || |   ||||||||||| | ||||| |||||    
T  29272758 aaagaaagagagtaaaaagcaagaggattgttttggttgtttggtacaagagaaagtagaataaaaagttgatgaaaagaaagatctaaatttagtaatt 29272857  T
Q  131 gacataaatacccttaaa 148  Q
    ||||| |||| |||||||    
T  29272858 gacattaatatccttaaa 29272875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 10723797 - 10723669
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||| ||||||| |||  | ||||| ||||||||||||| | |||||||||||| | || |||||||||||| || || ||||||||||||    
T  10723797 aagattgtatgaggaaagaaagagaggagaaagtgaggggattattttagttgtttggtataatagaaagtggaatagaaagttgaaggaaagaaagatc 10723698  T
Q  117 catatttattaattgacataaataccctt 145  Q
     |||| || ||||||||||||||||||||    
T  10723697 tatatatagtaattgacataaataccctt 10723669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 3800435 - 3800393
Alignment:
Q  172 gggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  3800435 gggtttgttaggatacacccactagtttttattaaggtgtgtt 3800393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 13349373 - 13349331
Alignment:
Q  172 gggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  13349373 gggtttgttaggatacactcactagtttttattaaggtgtgtt 13349331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 30675649 - 30675766
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||||||| || ||||| || ||||| |||||| ||||||||| ||   || ||||||| |||| ||  | |||||||||||| | ||||  |||||    
T  30675649 aaagaaaaagagtagaaagtgagaggattgttttggttgtttggtacaagggaaagtggaatggaaagttggaggaaagaaagatctacattttgtaatt 30675748  T
Q  131 gacataaatacccttaaa 148  Q
    | ||||| ||||||||||    
T  30675749 ggcataattacccttaaa 30675766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 31543550 - 31543461
Alignment:
Q  54 gggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacataaataccc 143  Q
    |||||| || ||| |||||||||||| | || ||||  |||||| | ||| ||||||||||||  ||||| |||||||||| ||||||||    
T  31543550 gggattgttatggttgtttggtataagagaaagtgggttagaaagtgaaaggaaagaaagatctgtattttttaattgacagaaataccc 31543461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 34706389 - 34706514
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| |||||| ||||||| ||||| |||||| | |||||| |||| | |||||||| ||| | ||  |||| ||||| |||  | ||||||||||||    
T  34706389 aagattgtatgaggaaagaaagagaatgaaaagtgaagggattgttttagttgtttggtttaatagaaaatggattagaacattggaggaaagaaagatc 34706488  T
Q  117 catatttattaattgacataaatacc 142  Q
     || |||  ||||||||||| |||||    
T  34706489 tattttttctaattgacatagatacc 34706514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 16220862 - 16220727
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatc 116  Q
    |||||| ||| || ||||||||||| || ||||| |  ||||| |||||| |||||||||||| | || |||||||||||| ||||| ||||||||||||    
T  16220862 aagattgtataaggaaagaaaaagagtagaaagtgaaaggattgttttggatgtttggtataagagaaagtggaatagaaagttaaaggaaagaaagatc 16220763  T
Q  117 ca-tatttattaattgacataaatacccttaaagat 151  Q
     | | |||| ||||||||||||||||||||||||||    
T  16220762 tattttttaataattgacataaatacccttaaagat 16220727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 39566141 - 39566024
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||||||| || ||||| || ||||| |||||| ||||||||| |  | || |||||||||||| ||  | |||||||||||| | ||||  |||||    
T  39566141 aaagaaaaagagtagaaagtgagaggattgttttggttgtttggtacacgagaaagtggaatagaaagttggaggaaagaaagatcaacattttgtaatt 39566042  T
Q  131 gacataaatacccttaaa 148  Q
    ||||||| ||||||||||    
T  39566041 gacataattacccttaaa 39566024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 41313111 - 41313025
Alignment:
Q  54 gggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacataaata 140  Q
    |||||| || ||| |||||||||||| | || ||| | |||||| | ||| |||||||||||| |||||| ||||||||||||||||    
T  41313111 gggattgttatggttgtttggtataagagaaagtgaattagaaagtgaaaggaaagaaagatctatattttttaattgacataaata 41313025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 26724753 - 26724676
Alignment:
Q  68 tgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacataaataccctt 145  Q
    ||||||||| || | || || ||||||||| | ||| |||||||||||  || |||||||||||||||||||||||||    
T  26724753 tgtttggtaaaagagaaagtagaatagaaagtaaaaggaaagaaagatatatctttattaattgacataaataccctt 26724676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 13269482 - 13269440
Alignment:
Q  172 gggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  13269482 gggtttgttaggatacacccactagtttttattaaggtgtgtt 13269440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 30207116 - 30207158
Alignment:
Q  172 gggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  30207116 gggtttgttaggatacacccactagtttttattaaggtgtgtt 30207158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 39922522 - 39922480
Alignment:
Q  172 gggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  39922522 gggtttgttaggatacacccactagtttttattaaggtgtgtt 39922480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 30203307 - 30203230
Alignment:
Q  68 tgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacataaataccctt 145  Q
    ||||||||| || | || || ||||||||| | | | |||||||||||  || |||||||||||||||||||||||||    
T  30203307 tgtttggtaaaagagaaagtagaatagaaagtaagaggaaagaaagatatatctttattaattgacataaataccctt 30203230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 34970044 - 34970004
Alignment:
Q  174 gtttgttaggataca--cactagtttttattaaggtgtgtt 212  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  34970044 gtttgttaggatacatccactagtttttattaaggtgtgtt 34970004  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 36265951 - 36265839
Alignment:
Q  36 aaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacat 135  Q
    |||||| || ||||| || ||||||||| || |||||| || || | || |||| ||||||| ||  | |||||||||| | | ||||| ||||||| ||    
T  36265951 aaaagagtagaaagtgagaggattatttgggttgtttgatacaagagaaagtgggatagaaagttggaggaaagaaagacctacatttaataattgatat 36265852  T
Q  136 aaatacccttaaa 148  Q
    |||||||||||||    
T  36265851 aaatacccttaaa 36265839  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 34079910 - 34080003
Alignment:
Q  52 aggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaattgacataaataccctt 145  Q
    |||||||| | |||| |||||||||||||| ||  |||||||| || || || |||||||| ||||||||||||||||||||||||||||||||    
T  34079910 aggggattgtcttggttgtttggtataaaagaaaatggaataggaagttgaaggaaagaaatatccatatttattaattgacataaataccctt 34080003  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 14592166 - 14592049
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||| ||| || |||||||| ||||| |||||| ||||||||| || | || |||||||||||| ||  | |||||||||| | | ||||| |||||    
T  14592166 aaagaaagagagtagaaagtaagcggattgttttggttgtttggtacaagagaaagtggaatagaaagttggaggaaagaaagacctaaatttagtaatt 14592067  T
Q  131 gacataaatacccttaaa 148  Q
    || || ||||||||||||    
T  14592066 gatattaatacccttaaa 14592049  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 25018299 - 25018237
Alignment:
Q  17 aagattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataa 79  Q
    |||||| |||||| ||||||||||| || || |  ||||||||||||||| ||||||||||||    
T  25018299 aagattgtatgaggaaagaaaaagagtagaatgcgaggggattattttggttgtttggtataa 25018237  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 46599049 - 46599175
Alignment:
Q  19 gattatatgagaaaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatcca 118  Q
    |||||||| | |||||||| ||| || |||||||| ||||| || ||  ||||||||| || | || || ||||||||| | | | ||||||| |||| |    
T  46599049 gattatatcaaaaaagaaagagagtagaaagtaagaggattgttatgattgtttggtacaagagaaagtagaatagaaagtaagaggaaagaatgatcta 46599148  T
Q  119 tatttattaattgacataaataccctt 145  Q
    | || | ||||||||||||||||||||    
T  46599149 tgttcaataattgacataaataccctt 46599175  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 48643966 - 48644007
Alignment:
Q  173 ggtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  48643966 ggtttgttaggatacacccactagtttttattaaggtgtgtt 48644007  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 3273579 - 3273539
Alignment:
Q  174 gtttgttaggatacac--actagtttttattaaggtgtgtt 212  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  3273579 gtttgttaggatacacccactagtttttattaaggtgtgtt 3273539  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 10368034 - 10368063
Alignment:
Q  172 gggtttgttaggatacacactagtttttat 201  Q
    ||||||||||||||||||||||||||||||    
T  10368034 gggtttgttaggatacacactagtttttat 10368063  T

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Target: scaffold0294 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 2121 - 2238
Alignment:
Q  31 aaagaaaaagaataaaaagtaaggggattattttggctgtttggtataaaataaggtggaatagaaaattaaatgaaagaaagatccatatttattaatt 130  Q
    ||||||||||| || ||||| || ||||| |||||| ||||||||| ||   || |||||||||||| ||  | |||||||||||| | ||||  |||||    
T  2121 aaagaaaaagagtagaaagtgagaggattgttttggttgtttggtacaagggaaagtggaatagaaagttggaggaaagaaagatctacattttgtaatt 2220  T
Q  131 gacataaatacccttaaa 148  Q
    ||||||| ||||||||||    
T  2221 gacataattacccttaaa 2238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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