View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_high_80 (Length: 209)
Name: NF20885_high_80
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 30272351 - 30272525
Alignment:
| Q |
19 |
attgggtcatgttccgtactaatgaggctagcaagatttcaacactcctattgttttattcaatgttgattgtgatcttgatcnnnnnnnagtagtgtcg |
118 |
Q |
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| T |
30272351 |
attgggtcatgttccgtactaatgaggctagcaagatttcaacactcctattgttttattcaatgttgattgtgatcttgatctttttttagtagtgtag |
30272450 |
T |
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| Q |
119 |
actcatatttaactaggattcttactctctccttgattatgaatgtagttgtgtttcatgagattaagccttcat |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272451 |
actcatatttaactaggattcttactctctccttgattatgaatgtagttgtgtttcatgagattaagccttcat |
30272525 |
T |
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