View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_high_84 (Length: 206)

Name: NF20885_high_84
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_high_84
NF20885_high_84
[»] chr2 (3 HSPs)
chr2 (18-181)||(2296039-2296202)
chr2 (18-182)||(2311852-2312016)
chr2 (26-149)||(2322936-2323058)
[»] chr7 (4 HSPs)
chr7 (150-182)||(14579607-14579639)
chr7 (150-182)||(15996677-15996709)
chr7 (150-182)||(15998338-15998370)
chr7 (150-182)||(44059127-44059159)
[»] chr1 (1 HSPs)
chr1 (150-178)||(47863995-47864023)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 2296202 - 2296039
Alignment:
Q  18 cttttgaactgtaatctctaactgaatatgttatagcagatttcttctattgcttgtatatgagcattttccttgaagtcttttcattcattctaatttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2296202 cttttgaactgtaatctctaactgaatatgttatagcagatttcttctattgcttgtatatgagcattttccttgaagtcttttcattcattctaatttc 2296103  T
Q  118 tattgaaccacaattacaagatgagatatttttattaggaaaccaagtaaaatgaatagaatga 181  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2296102 tattgaaccacgattacaagatgagatatttttattaggaaaccaagtaaaatgaatagaatga 2296039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 2312016 - 2311852
Alignment:
Q  18 cttttgaactgtaatctctaactgaatatgttatagcagatttcttctattgcttgtatatgagcattttccttgaagtcttttcattcattctaatttc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2312016 cttttgaactgtaatctctaactgaatatgttatagcagatttcttctattgcttgtatatgagcattttccttgaagtcttttcattcaatctaatttc 2311917  T
Q  118 tattgaaccacaattacaagatgagatatttttattaggaaaccaagtaaaatgaatagaatgaa 182  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2311916 tattgaaccacaattacaagatgagatatttttatacggaaaccaagtaaaatgaatagaatgaa 2311852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 2323058 - 2322936
Alignment:
Q  26 ctgtaatctctaactgaatatgttatagcagatttcttctattgcttgtatatgagcattttccttgaagtcttttcattcattctaatttctattgaac 125  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  2323058 ctgtaatctctaactgaatctgttagagcagatttcttctattgcttgtatatgaacattttccttgtagtcttttcattcattctaatttctattgaac 2322959  T
Q  126 cacaattacaagatgagatatttt 149  Q
    || ||||||||||| ||| |||||    
T  2322958 ca-aattacaagatcagagatttt 2322936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 14579639 - 14579607
Alignment:
Q  150 tattaggaaaccaagtaaaatgaatagaatgaa 182  Q
    ||||||||||||||| |||||||||||||||||    
T  14579639 tattaggaaaccaagaaaaatgaatagaatgaa 14579607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 15996709 - 15996677
Alignment:
Q  150 tattaggaaaccaagtaaaatgaatagaatgaa 182  Q
    ||||||||||||||| |||||||||||||||||    
T  15996709 tattaggaaaccaagaaaaatgaatagaatgaa 15996677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 15998370 - 15998338
Alignment:
Q  150 tattaggaaaccaagtaaaatgaatagaatgaa 182  Q
    ||||||||||||||| |||||||||||||||||    
T  15998370 tattaggaaaccaagaaaaatgaatagaatgaa 15998338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 44059127 - 44059159
Alignment:
Q  150 tattaggaaaccaagtaaaatgaatagaatgaa 182  Q
    ||||||||||||||| |||||||||||||||||    
T  44059127 tattaggaaaccaaggaaaatgaatagaatgaa 44059159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 47864023 - 47863995
Alignment:
Q  150 tattaggaaaccaagtaaaatgaatagaa 178  Q
    |||||||||||||||||||||||||||||    
T  47864023 tattaggaaaccaagtaaaatgaatagaa 47863995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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