View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_low_1 (Length: 1013)

Name: NF20885_low_1
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_low_1
NF20885_low_1
[»] chr8 (1 HSPs)
chr8 (367-1013)||(42247658-42248309)


Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 367 - 1013
Target Start/End: Complemental strand, 42248309 - 42247658
Alignment:
Q  367 tttaaagagaaacacgtctttaaaataatatttgagcaaatccgtgatagactagctagctgtcctcacaacccatcgatttgttaatccatcagtattg 466  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42248309 tttaaagagaaacacatctttaaaataatatttgagcaaatccgtgatagactagctagctgtcctcacaacccatcgatttgttaatccatcagtattg 42248210  T
Q  467 atttggaaatatagccaacatgtttcaacacattaattatgannnnnnnn-gaagctataggcccatgatattgcatagcgctgcatgaaaaagaagcat 565  Q
    ||||||||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  42248209 atttggaaatatagccaacttgtttcaacacattaattatgatttttttttgaagctataggcccatgatgttgcatagctctgcatgaaaaagaagcat 42248110  T
Q  566 tatcatttctggtaaattttcgaccacagggagaactatcacatgtatagtcaactatatactatttcttagacgtatatat----gtatcaatttgaat 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| ||||    
T  42248109 tatcatttctggtaaattttcgaccacagggagaactatcacatgtatagtcaactatatactatttcttagacgtatatatatatgtatcaatt-gaat 42248011  T
Q  662 ggatctagtcttagatatatatcttgaatacactggccagtggttggtgaaggacaccgcattcaattttgtatcatcaaatgatttctgatattgacat 761  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42248010 ggatctagtct-agatatatatcttgaatacactggccagtggttggtgaaggacaccgcattcaattttgtatcatcaaatgatttctgatattgacat 42247912  T
Q  762 tatatcatgcctactcactaagacacattttattagttgatctagcaaataaacacgtctctttactagcttatatannnnnnncttaaccccttgtagt 861  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||    
T  42247911 tagatcatgcctactcactaagacacattttattagttgatctagcaaataaacacgtctctttactagcttatttatttatttcttaaccccttgtagt 42247812  T
Q  862 attaatttgatgtgagacaattcacatcaaattaatacctctattattgtaagatataaatatggtgtgcccaattttgagagttgctgcacaaatatcc 961  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42247811 attaatttgatgtgagacaattcaaatcaaattaatacctctattattgtaagatataaatatggtgtgcccaattttgagagttgctgcacaaatatcc 42247712  T
Q  962 ctgc--ataattctaaacattttttggtgaattcttaattctaaactaacacct 1013  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42247711 ctgcatataattctaaacattttttggtgaattcttaattctaaactaacacct 42247658  T

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