View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_low_10 (Length: 509)

Name: NF20885_low_10
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_low_10
NF20885_low_10
[»] chr5 (10 HSPs)
chr5 (387-468)||(31487089-31487170)
chr5 (387-468)||(31486841-31486922)
chr5 (387-468)||(24351477-24351558)
chr5 (412-468)||(24350924-24350980)
chr5 (387-498)||(12442128-12442239)
chr5 (411-468)||(7673224-7673281)
chr5 (391-468)||(43394959-43395036)
chr5 (422-461)||(3006726-3006765)
chr5 (396-462)||(16528628-16528694)
chr5 (411-468)||(35159746-35159803)
[»] chr8 (26 HSPs)
chr8 (387-498)||(44429913-44430024)
chr8 (387-468)||(44433648-44433729)
chr8 (387-468)||(33198852-33198933)
chr8 (388-468)||(39922094-39922174)
chr8 (388-496)||(3459113-3459221)
chr8 (410-468)||(2084918-2084976)
chr8 (387-468)||(1197897-1197978)
chr8 (387-468)||(23828133-23828214)
chr8 (419-468)||(33198652-33198701)
chr8 (391-468)||(37410078-37410155)
chr8 (401-468)||(604508-604576)
chr8 (394-462)||(35617708-35617776)
chr8 (389-457)||(44434174-44434242)
chr8 (422-468)||(604853-604899)
chr8 (390-468)||(32062839-32062917)
chr8 (430-498)||(604652-604720)
chr8 (401-468)||(44429083-44429150)
chr8 (387-468)||(23838348-23838430)
chr8 (394-468)||(40399500-40399574)
chr8 (391-457)||(44429420-44429485)
chr8 (401-457)||(604344-604401)
chr8 (411-468)||(23830951-23831008)
chr8 (411-468)||(29580044-29580101)
chr8 (431-468)||(38294977-38295014)
chr8 (388-468)||(27853676-27853756)
chr8 (446-495)||(42045715-42045764)
[»] chr6 (12 HSPs)
chr6 (387-462)||(23902526-23902601)
chr6 (387-468)||(17200005-17200086)
chr6 (389-468)||(9828940-9829019)
chr6 (388-468)||(17201617-17201697)
chr6 (405-456)||(8685185-8685236)
chr6 (388-442)||(17011129-17011183)
chr6 (388-462)||(17080055-17080129)
chr6 (387-498)||(17202869-17202980)
chr6 (405-456)||(8674506-8674557)
chr6 (431-468)||(17200561-17200598)
chr6 (388-468)||(4811068-4811148)
chr6 (388-460)||(25068208-25068280)
[»] chr2 (10 HSPs)
chr2 (389-468)||(3249805-3249884)
chr2 (387-468)||(3249588-3249669)
chr2 (411-468)||(5001705-5001762)
chr2 (387-468)||(11131259-11131340)
chr2 (391-468)||(11735932-11736009)
chr2 (392-468)||(11736325-11736401)
chr2 (387-461)||(41326388-41326462)
chr2 (387-468)||(5001527-5001608)
chr2 (387-468)||(28611814-28611895)
chr2 (411-468)||(28612239-28612296)
[»] chr4 (26 HSPs)
chr4 (391-468)||(47428421-47428498)
chr4 (415-468)||(8079066-8079119)
chr4 (436-498)||(7526420-7526482)
chr4 (389-498)||(2177285-2177394)
chr4 (428-468)||(9711318-9711358)
chr4 (388-468)||(48076388-48076468)
chr4 (394-498)||(36639198-36639302)
chr4 (389-468)||(53144851-53144930)
chr4 (388-496)||(54653627-54653735)
chr4 (411-468)||(4941721-4941778)
chr4 (387-468)||(44500691-44500772)
chr4 (388-468)||(23952786-23952866)
chr4 (388-468)||(43161746-43161826)
chr4 (388-468)||(47768972-47769052)
chr4 (388-468)||(48076210-48076290)
chr4 (425-460)||(10466609-10466644)
chr4 (387-462)||(22292917-22292992)
chr4 (411-495)||(24049608-24049692)
chr4 (410-468)||(28389777-28389835)
chr4 (387-468)||(8118616-8118697)
chr4 (387-468)||(8397748-8397829)
chr4 (411-468)||(21581282-21581339)
chr4 (411-468)||(52689624-52689681)
chr4 (428-468)||(8078954-8078994)
chr4 (388-468)||(8118402-8118481)
chr4 (388-468)||(21585562-21585642)
[»] chr3 (20 HSPs)
chr3 (387-468)||(43819347-43819428)
chr3 (387-468)||(11220796-11220876)
chr3 (388-468)||(43017291-43017371)
chr3 (387-466)||(38887373-38887452)
chr3 (411-462)||(52300754-52300805)
chr3 (389-462)||(40050871-40050944)
chr3 (388-468)||(11454583-11454663)
chr3 (388-468)||(47503059-47503139)
chr3 (388-467)||(37760517-37760596)
chr3 (387-466)||(53047595-53047674)
chr3 (387-461)||(18094760-18094834)
chr3 (422-468)||(21969013-21969059)
chr3 (422-468)||(21991449-21991495)
chr3 (387-468)||(18094975-18095056)
chr3 (411-468)||(47503232-47503289)
chr3 (411-468)||(24365777-24365834)
chr3 (391-468)||(36643133-36643210)
chr3 (388-468)||(837209-837289)
chr3 (388-468)||(46451490-46451570)
chr3 (411-463)||(51654087-51654139)
[»] chr7 (18 HSPs)
chr7 (387-496)||(4454943-4455052)
chr7 (387-468)||(16671624-16671705)
chr7 (387-468)||(17645992-17646073)
chr7 (391-468)||(18486657-18486734)
chr7 (387-468)||(48640806-48640887)
chr7 (388-468)||(4680901-4680981)
chr7 (388-468)||(9141966-9142046)
chr7 (411-496)||(18487194-18487279)
chr7 (387-468)||(11650013-11650094)
chr7 (387-468)||(16492550-16492630)
chr7 (388-468)||(12140866-12140946)
chr7 (411-467)||(16362696-16362752)
chr7 (389-468)||(23591419-23591498)
chr7 (149-190)||(6173714-6173755)
chr7 (411-468)||(48641447-48641504)
chr7 (420-468)||(2853222-2853270)
chr7 (416-468)||(16671294-16671346)
chr7 (416-468)||(17645662-17645714)
[»] chr1 (19 HSPs)
chr1 (387-468)||(5428547-5428628)
chr1 (387-468)||(42496939-42497020)
chr1 (387-468)||(42497297-42497378)
chr1 (396-468)||(43761975-43762047)
chr1 (390-468)||(1156071-1156149)
chr1 (387-468)||(16165692-16165773)
chr1 (411-468)||(21617799-21617856)
chr1 (387-468)||(42492171-42492252)
chr1 (387-468)||(44262683-44262764)
chr1 (388-468)||(44263109-44263189)
chr1 (388-468)||(51114110-51114190)
chr1 (411-466)||(4100593-4100648)
chr1 (425-468)||(41462571-41462614)
chr1 (387-468)||(1647562-1647643)
chr1 (387-468)||(6537661-6537742)
chr1 (391-468)||(51113746-51113823)
chr1 (388-498)||(51113926-51114036)
chr1 (388-468)||(318575-318655)
chr1 (388-468)||(27296357-27296437)
[»] scaffold0001 (1 HSPs)
scaffold0001 (411-468)||(196705-196762)
[»] scaffold0013 (1 HSPs)
scaffold0013 (411-496)||(102746-102831)
[»] scaffold1333 (1 HSPs)
scaffold1333 (101-142)||(1842-1883)
[»] scaffold0294 (1 HSPs)
scaffold0294 (391-460)||(12399-12468)


Alignment Details
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 31487170 - 31487089
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||| ||| |||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  31487170 ggtctgcagtaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaacctaacaaatttcatct 31487089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 31486922 - 31486841
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||| |||| |||| ||| ||||||||| ||||||| ||||||| |||| |||||||||||||||||||||| |||||    
T  31486922 ggtctgcaacaatttaacctaatattttcccgttcatttgctgtattaggttaacagtaatttaacctaacaaattccatct 31486841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 24351558 - 24351477
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||| ||| |||| |||   ||||||||||||||||| ||||| ||| ||| | |||||||||||||||||||||||    
T  24351558 ggtctgcagtaatttaacctaattatttcccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 24351477  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 468
Target Start/End: Complemental strand, 24350980 - 24350924
Alignment:
Q  412 tttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||||||| ||||| ||| ||| | |||||||||||||||||||||||    
T  24350980 tttcccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 24350924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 498
Target Start/End: Complemental strand, 12442239 - 12442128
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatc 486  Q
    ||||||||||||| |||| |||  ||||||||||||||||   ||||| ||| ||| | ||||||||||||||||| |||||       |||||| || |    
T  12442239 ggtctgcagcaatttaacctaattttttcccgctcatttgccttattaggtttgcaattatttaacctaacaaattacatctacaaaaatgcatcgcacc 12442140  T
Q  487 aatttcattcat 498  Q
    ||||||||||||    
T  12442139 aatttcattcat 12442128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 7673281 - 7673224
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||| ||||||||| ||||| ||| ||| | |||||||||||||||||||||||    
T  7673281 ttttcccgttcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 7673224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 468
Target Start/End: Complemental strand, 43395036 - 43394959
Alignment:
Q  391 tgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||| |||| |||  |||||| ||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  43395036 tgcagcaatttaacctaattttttcctgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 43394959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 461
Target Start/End: Complemental strand, 3006765 - 3006726
Alignment:
Q  422 atttgttgtattacgttagcagtaatttaacctaacaaat 461  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  3006765 atttgttgtattaagttagcactaatttaacctaacaaat 3006726  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 16528628 - 16528694
Alignment:
Q  396 caatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatt 462  Q
    |||| |||| ||| ||||||||||||||||| | ||||| ||| ||| | |||||||||||||||||    
T  16528628 caatttaacctaacattttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 16528694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 35159746 - 35159803
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||| ||||    
T  35159746 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattttatct 35159803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 498
Target Start/End: Original strand, 44429913 - 44430024
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatc 486  Q
    ||||||||||||  | |||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||       |||||| || |    
T  44429913 ggtctgcagcaacttcacttaatattttccctcccatttgttgtattatgttagcagtaatttaacctaacaaatttcatctaaaaaaatgcatcgcacc 44430012  T
Q  487 aatttcattcat 498  Q
    ||||||||||||    
T  44430013 aatttcattcat 44430024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 44433648 - 44433729
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||  | |||||| |||||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  44433648 ggtctgcagcaacttcacttaatattttccctcccatttgctgtattatgttagcagtaatttaacctaacaaatttcatct 44433729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 33198852 - 33198933
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| ||| ||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||| |||||    
T  33198852 ggtctgcagcaatttaacctaatatttttccgctcatttgctgtattaggttaacagtgatttaacctaacaaattccatct 33198933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 39922174 - 39922094
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| ||||||||  |||||||||||||||||| ||||| ||| ||| | ||||||||||||||||| |||||    
T  39922174 gtctgcagcaatttaacttaattttttcccgctcatttgttttattaggtttgcaattatttaacctaacaaattccatct 39922094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 496
Target Start/End: Complemental strand, 3459221 - 3459113
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatca 487  Q
    |||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | |||||| ||||||||||||||||       |||||| |||||    
T  3459221 gtctgcagcaatttaacataattttttcccgctcatttgctttattaggtttgcaattatttaatctaacaaatttcatctaaaaaaatgcatcgcatca 3459122  T
Q  488 atttcattc 496  Q
    |||||||||    
T  3459121 atttcattc 3459113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 2084918 - 2084976
Alignment:
Q  410 attttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||| |||||||| ||||||| ||||| ||||||||||||||||||||| |||||    
T  2084918 attttccctctcatttgctgtattaggttagtagtaatttaacctaacaaattccatct 2084976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 1197897 - 1197978
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||||||||||||||| | ||||| | | ||| | |||||||||||||||||||||||    
T  1197897 ggtctgcagcaatttaacctaatcttttcccgctcatttgctttattagggttgcaattatttaacctaacaaatttcatct 1197978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 23828214 - 23828133
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  23828214 ggtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 23828133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 33198652 - 33198701
Alignment:
Q  419 ctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  33198652 ctcatttgctgtattaggttagcactaatttaacctaacaaatttcatct 33198701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 468
Target Start/End: Complemental strand, 37410155 - 37410078
Alignment:
Q  391 tgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||| ||||||||  |||| ||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  37410155 tgcagcaatttaacttaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 37410078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 468
Target Start/End: Complemental strand, 604576 - 604508
Alignment:
Q  401 taacttaagattttcccgctc-atttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||| ||| |||||||| ||| ||||| ||||||| ||||||||||||||||| |||||||||||||||    
T  604576 taacctaatattttccctctctatttgctgtattaggttagcagtaatttaacataacaaatttcatct 604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 35617708 - 35617776
Alignment:
Q  394 agcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatt 462  Q
    |||||| ||||||||  |||||||||||||||||| ||||| ||| ||| | |||||||||||||||||    
T  35617708 agcaatttaacttaattttttcccgctcatttgttttattaggtttgcaattatttaacctaacaaatt 35617776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 44434174 - 44434242
Alignment:
Q  389 tctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaac 457  Q
    ||||||||||  |||| ||| |||||||| |||||||||||||||| |||||  |||||||||||||||    
T  44434174 tctgcagcaacttaacctaatattttccctctcatttgttgtattaggttagtggtaatttaacctaac 44434242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 604899 - 604853
Alignment:
Q  422 atttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  604899 atttgctgtattaggttaccagtaatttaacctaacaaatttcatct 604853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 468
Target Start/End: Original strand, 32062839 - 32062917
Alignment:
Q  390 ctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||| |||  |||  |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  32062839 ctgcagcaatttaaactaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 32062917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 604720 - 604652
Alignment:
Q  430 tattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatcaatttcattcat 498  Q
    ||||| || ||||||||||||||||||||||||||||||       |||||| || |||||||||||||    
T  604720 tattaggtaagcagtaatttaacctaacaaatttcatctaaaaaaatgcatcgcaacaatttcattcat 604652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 468
Target Start/End: Original strand, 44429083 - 44429150
Alignment:
Q  401 taacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||| ||| |||||||| |||||||| | ||||| || |||| ||||||||||||||||||| |||||    
T  44429083 taacctaatattttccctctcatttgctttattaggtaagcaataatttaacctaacaaattccatct 44429150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 23838430 - 23838348
Alignment:
Q  387 ggtctgcagcaatctaac-ttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| ||||  |||||||||||||||| | |||||  || ||| | ||||||||||||||||| |||||    
T  23838430 ggtctgcagcaatttaaccttaattttttcccgctcatttgctttattagttttgcaattatttaacctaacaaattgcatct 23838348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 468
Target Start/End: Complemental strand, 40399574 - 40399500
Alignment:
Q  394 agcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||| |||| |||  |||||||||||||||||| ||||| ||| | | | ||||||||||||||||| |||||    
T  40399574 agcaatttaacctaattttttcccgctcatttgttttattaggtttgtaattatttaacctaacaaattccatct 40399500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 457
Target Start/End: Original strand, 44429420 - 44429485
Alignment:
Q  391 tgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaac 457  Q
    ||||||||  |||| ||| |||||||| ||| |||||||||||| ||||||| ||||||||||||||    
T  44429420 tgcagcaacttaacctaatattttccctctcgtttgttgtattaggttagca-taatttaacctaac 44429485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 457
Target Start/End: Complemental strand, 604401 - 604344
Alignment:
Q  401 taacttaagattttcccgctc-atttgttgtattacgttagcagtaatttaacctaac 457  Q
    |||| ||| |||||||| ||| ||||||||||||| |||| |||||||||||||||||    
T  604401 taacctaatattttccctctctatttgttgtattaggttaacagtaatttaacctaac 604344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 23831008 - 23830951
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  23831008 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattgcatct 23830951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 29580101 - 29580044
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||||| ||||| ||| ||| | |||||| |||||| |||||||||    
T  29580101 ttttcccgctcatttgttttattaggtttgcaattatttaaactaacacatttcatct 29580044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 38295014 - 38294977
Alignment:
Q  431 attacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  38295014 attaggttagcagcaatttaacctaacaaatttcatct 38294977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 27853756 - 27853676
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||| |||||| |||| |||  |||||||||||||||  | ||||| ||| ||| | ||||||||||||||||| |||||    
T  27853756 gtctgtagcaatttaacctaattttttcccgctcatttactttattaggtttgcaattatttaacctaacaaattccatct 27853676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 42045715 - 42045764
Alignment:
Q  446 atttaacctaacaaatttcatctnnnnnnntgcatcacatcaatttcatt 495  Q
    |||||||||||||||||||||||       ||||||||||||||||||||    
T  42045715 atttaacctaacaaatttcatctaaaaaaatgcatcacatcaatttcatt 42045764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 387 - 462
Target Start/End: Original strand, 23902526 - 23902601
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatt 462  Q
    ||||||||||||| |||| ||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  23902526 ggtctgcagcaatttaacctaatattttcccgttcatttgttgtattaggttaccagtaatttaacctaacaaatt 23902601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 17200005 - 17200086
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||| |||||| |||| ||| |||||||| |||||||| | ||||| |||| |||||||||||||||| |||||||||||    
T  17200005 ggtctgtagcaatttaacctaatattttccctctcatttgctatattaggttaacagtaatttaacctaataaatttcatct 17200086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 468
Target Start/End: Original strand, 9828940 - 9829019
Alignment:
Q  389 tctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||| ||||||||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  9828940 tctgcagcaatttaacttaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 9829019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 17201617 - 17201697
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||| |||| |||| |||  |||| ||||||||||||| ||||| ||| ||| | |||||||||||||||||||||||    
T  17201617 gtctgcaacaatttaacctaacttttttccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 17201697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 456
Target Start/End: Original strand, 8685185 - 8685236
Alignment:
Q  405 ttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaa 456  Q
    |||| ||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  8685185 ttaatattttcccgctcatttgctgtattatgttagcaataatttaacctaa 8685236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 17011129 - 17011183
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagca 442  Q
    |||||||||||| |||| ||| ||||||||||||||||| ||||||| |||||||    
T  17011129 gtctgcagcaatttaacctaatattttcccgctcatttgatgtattatgttagca 17011183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 17080055 - 17080129
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatt 462  Q
    ||||||||||| ||||| ||| |||||||  |  ||||| ||||||| ||||||| |||||||||||||||||||    
T  17080055 gtctgcagcaacctaacctaatattttccgtccaatttgctgtattaggttagcattaatttaacctaacaaatt 17080129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 498
Target Start/End: Original strand, 17202869 - 17202980
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatc 486  Q
    ||||||||||||| |||| |||  ||||||||| |||||| | |||||  || ||| | ||||||||||||||||| |||||       |||||| ||||    
T  17202869 ggtctgcagcaatttaacctaattttttcccgcccatttgctttattagatttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcatc 17202968  T
Q  487 aatttcattcat 498  Q
    ||||||||||||    
T  17202969 aatttcattcat 17202980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 456
Target Start/End: Original strand, 8674506 - 8674557
Alignment:
Q  405 ttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaa 456  Q
    |||| ||||||||||| ||||| ||||||| ||||||| |||||||||||||    
T  8674506 ttaatattttcccgcttatttgctgtattatgttagcaataatttaacctaa 8674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 17200561 - 17200598
Alignment:
Q  431 attacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  17200561 attaggttagcagcaatttaacctaacaaatttcatct 17200598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 4811148 - 4811068
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  ||||||||||| |||| | ||||| ||| ||| | |||||||||||| |||| |||||    
T  4811148 gtctgcagcaatttaacctaattttttcccgctcgtttgctttattaggtttgcaattatttaacctaactaattccatct 4811068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 25068208 - 25068280
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaa 460  Q
    |||||||||||| |||| |||  |||| ||||||||||| | ||||| ||| ||| | |||||||||||||||    
T  25068208 gtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaa 25068280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 389 - 468
Target Start/End: Complemental strand, 3249884 - 3249805
Alignment:
Q  389 tctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||| |||| |||| ||| ||||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  3249884 tctgcaacaatttaacctaatatttttccgcttatttgctgtattaggttagcagtaatttaacctaacaaatttcatct 3249805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 3249669 - 3249588
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||  ||| ||||||||||||||||| | ||||| |||| ||||||||||||||||||| ||||||||    
T  3249669 ggtctgcagcaatttaagctaatattttcccgctcatttgctatattaggttaacagtaatttaacctaacaattttcatct 3249588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 5001762 - 5001705
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  5001762 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 5001705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 11131259 - 11131340
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||  |||||||| | |||||| || |  || || |||| |||||||| ||||||||||||||||||||||||    
T  11131259 ggtctgcagcaacttaacttaataatttccctctaaaatgctgcattaggttagcagcaatttaacctaacaaatttcatct 11131340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 11735932 - 11736009
Alignment:
Q  391 tgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||| |||| ||| ||||||||||||||||| |  || | ||| ||| | |||||||||||||||||||||||    
T  11735932 tgcagcaatttaacctaatattttcccgctcatttgcttcataaggtttgcaattatttaacctaacaaatttcatct 11736009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 468
Target Start/End: Original strand, 11736325 - 11736401
Alignment:
Q  392 gcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||| |||| ||| ||||||||||||||||| |  || | ||| ||| | |||||||||||||||||||||||    
T  11736325 gcagcaatttaacctaatattttcccgctcatttgcttcataaggtttgcaattatttaacctaacaaatttcatct 11736401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 41326388 - 41326462
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaat 461  Q
    |||||||| |||| ||||||||  ||| |||||||||||||| ||||| ||| ||| | ||||||||||| ||||    
T  41326388 ggtctgcaacaatttaacttaatttttccccgctcatttgttttattaagtttgcaattatttaacctaataaat 41326462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 5001608 - 5001527
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||  |||  ||||| || ||||||| | ||||| |||| |||| ||||||||||| |||||||||||    
T  5001608 ggtctgcagcaatttaaactaattttttctcgttcatttgctttattaggttaacagttatttaacctaaaaaatttcatct 5001527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 28611895 - 28611814
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||||||||||||||| |  |||| ||| ||| | |||||||||||||| || |||||    
T  28611895 ggtctgcagcaatttaacctaattttttcccgctcatttgcttgattaggtttgcaattatttaacctaacaagttccatct 28611814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 28612296 - 28612239
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  28612296 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 28612239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 468
Target Start/End: Complemental strand, 47428498 - 47428421
Alignment:
Q  391 tgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||  |||| ||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||    
T  47428498 tgcagcaacttaacctaatattttccctcccatttgttgtattaggttagcagtaatttaacctaacaaattccatct 47428421  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 8079066 - 8079119
Alignment:
Q  415 cccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| |||||    
T  8079066 cccgctcatttgttgtattaggttagcagtagtttaacctaacaaattccatct 8079119  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 7526482 - 7526420
Alignment:
Q  436 gttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatcaatttcattcat 498  Q
    ||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||    
T  7526482 gttagcagtaatttaacctaacaaattccatctaaaaatatgcatcacatcaatttcattcat 7526420  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 498
Target Start/End: Original strand, 2177285 - 2177394
Alignment:
Q  389 tctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatcaa 488  Q
    ||||||||||| ||| ||||  |||||||||||||||| | ||||| ||| ||| | | |||||||||||||||||||||       |||||| || |||    
T  2177285 tctgcagcaatttaatttaattttttcccgctcatttgctttattaggtttgcaattacttaacctaacaaatttcatctaaaaacatgcatcgcaccaa 2177384  T
Q  489 tttcattcat 498  Q
    ||||||||||    
T  2177385 tttcattcat 2177394  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 468
Target Start/End: Original strand, 9711318 - 9711358
Alignment:
Q  428 tgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  9711318 tgtattaggttagcagtaatttaacctaacaaatttcatct 9711358  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 48076388 - 48076468
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  ||| |||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  48076388 gtctgcagcaatttaacctaatttttccccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 48076468  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 36639198 - 36639302
Alignment:
Q  394 agcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatcaatttca 493  Q
    |||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||       |||||| || ||||||||    
T  36639198 agcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatttca 36639297  T
Q  494 ttcat 498  Q
    |||||    
T  36639298 ttcat 36639302  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 468
Target Start/End: Complemental strand, 53144930 - 53144851
Alignment:
Q  389 tctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||| |||| |||  |||||||||||||||| | ||||| ||| | | | |||||||||||||||||||||||    
T  53144930 tctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatttcatct 53144851  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 496
Target Start/End: Complemental strand, 54653735 - 54653627
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatca 487  Q
    ||||||| |||| |||| |||  |||||||||||||||| | ||||| ||| ||||| |||||||||||||||||  ||||       ||||||||| ||    
T  54653735 gtctgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcagttatttaacctaacaaattcaatctaaaaaaatgcatcacacca 54653636  T
Q  488 atttcattc 496  Q
    |||||||||    
T  54653635 atttcattc 54653627  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 4941721 - 4941778
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  4941721 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 4941778  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 44500691 - 44500772
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||| ||||||||| |||||    
T  44500691 ggtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacgtaacaaattccatct 44500772  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 23952866 - 23952786
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  |||| ||||||||||||| ||||| ||| ||| | ||||||| ||||||||| |||||    
T  23952866 gtctgcagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaacttaacaaattccatct 23952786  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 43161826 - 43161746
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||| |||| |||| |||  ||||||||||||||||   ||||| ||| ||| | |||||||||||||||||||||||    
T  43161826 gtctgcaacaatttaacctaattttttcccgctcatttgcattattaggtttgcaattatttaacctaacaaatttcatct 43161746  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 47768972 - 47769052
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  |||| ||||||||||| |  |||| ||| ||| | |||||||||||||||||||||||    
T  47768972 gtctgcagcaatttaacctaatttttttccgctcatttgcttcattaggtttgcaattatttaacctaacaaatttcatct 47769052  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 48076210 - 48076290
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||  |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  48076210 gtctgcagcaatttaatctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 48076290  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 10466609 - 10466644
Alignment:
Q  425 tgttgtattacgttagcagtaatttaacctaacaaa 460  Q
    |||||||||| |||||||||||||||||||||||||    
T  10466609 tgttgtattaggttagcagtaatttaacctaacaaa 10466644  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 462
Target Start/End: Original strand, 22292917 - 22292992
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatt 462  Q
    ||||||||||||| |||| |||  |||| ||||||||||| | ||||| ||| ||| | |||||||||||||||||    
T  22292917 ggtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 22292992  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 495
Target Start/End: Original strand, 24049608 - 24049692
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatcaatttcatt 495  Q
    |||||||||||||||| | ||||| ||| ||| | |||||||||||| ||||||||||       ||||||||| ||||||||||    
T  24049608 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacgaatttcatctaaaaaaatgcatcacaccaatttcatt 24049692  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 468
Target Start/End: Complemental strand, 28389835 - 28389777
Alignment:
Q  410 attttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  28389835 attttcccgctcatttgctttattaggtttgcatttatttaacctaacaaattccatct 28389777  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 8118616 - 8118697
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||| |||| |||| |||  |||| ||||||||||| | ||||| | | ||| | |||||||||||||||||||||||    
T  8118616 ggtctgcaacaatttaacctaatttttttccgctcatttgctttattagggttgcaattatttaacctaacaaatttcatct 8118697  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 8397829 - 8397748
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||| | |||| |||||| ||||| ||| ||| | ||||||| |||||||||||||||    
T  8397829 ggtctgcagcaatttaacctaatttttttctgctcgtttgttttattaggtttgcaattatttaacttaacaaatttcatct 8397748  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 21581339 - 21581282
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||| |||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  21581339 ttttctcgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 21581282  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 52689681 - 52689624
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||| | ||||| ||| | | | |||||||||||||||||||||||    
T  52689681 ttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatttcatct 52689624  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 468
Target Start/End: Original strand, 8078954 - 8078994
Alignment:
Q  428 tgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||| |||||||||| |||||||||||||||| |||||    
T  8078954 tgtattatgttagcagtagtttaacctaacaaattccatct 8078994  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 8118402 - 8118481
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||| |||| ||||||||  |||| | ||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  8118402 gtctgcaacaatttaacttaatttttttc-gctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 8118481  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 21585642 - 21585562
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||| |||| ||||||||  |||| || |||||||| | ||||| ||| ||| | ||||||| |||||||||||||||    
T  21585642 gtctgcaacaatttaacttaatttttttcctctcatttgctttattaggtttgcaattatttaacttaacaaatttcatct 21585562  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 43819347 - 43819428
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| ||| ||||||||||||||||| ||||||| |||| || ||||||||||||| || ||||||||    
T  43819347 ggtctgcagcaatttaacctaatattttcccgctcatttgctgtattaagttaacactaatttaacctaataattttcatct 43819428  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 11220796 - 11220876
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| ||| ||||| || || ||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  11220796 ggtctgcagcaatttaacctaatatttttcc-cttatttgctgtattaggttagcagtaattttacctaacaaatttcatct 11220876  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 43017291 - 43017371
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  43017291 gtctgcagcaatttaacctaattttttcccgctcatttgctttattaagtttgcaattatttaacctaacaaatttcatct 43017371  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 466
Target Start/End: Complemental strand, 38887452 - 38887373
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcat 466  Q
    ||||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||    
T  38887452 ggtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcat 38887373  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 462
Target Start/End: Original strand, 52300754 - 52300805
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatt 462  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  52300754 ttttcccgctcatttactgtattaggttagcagtaatttaacctaacaaatt 52300805  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 40050871 - 40050944
Alignment:
Q  389 tctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatt 462  Q
    ||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| |||||||||||||||||||    
T  40050871 tctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaataatttaacctaacaaatt 40050944  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 11454583 - 11454663
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  11454583 gtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaatcatttaacctaacaaattccatct 11454663  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 47503139 - 47503059
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  ||||||||||||||||   ||||| ||| ||| | |||||||||||||||||||||||    
T  47503139 gtctgcagcaatttaacctaattttttcccgctcatttgcattattaggtttgcaattatttaacctaacaaatttcatct 47503059  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 467
Target Start/End: Original strand, 37760517 - 37760596
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatc 467  Q
    ||||||| |||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||||||||    
T  37760517 gtctgcaacaatttaacctaaatttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatc 37760596  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 466
Target Start/End: Complemental strand, 53047674 - 53047595
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcat 466  Q
    ||||||||||||| |||| |||  |||||||||||||||| | | ||| ||| ||| | |||||||||||||||||||||    
T  53047674 ggtctgcagcaatttaacataattttttcccgctcatttgctttgttaggtttgcaattatttaacctaacaaatttcat 53047595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 18094760 - 18094834
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaat 461  Q
    ||||||||||||| ||||||||  |||||||||| ||||| | ||||| ||| ||| | ||||||||||||||||    
T  18094760 ggtctgcagcaatttaacttaattttttcccgctaatttgctttattaggtttgcaattatttaacctaacaaat 18094834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 21969059 - 21969013
Alignment:
Q  422 atttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  21969059 atttgctgtattaggttagcagtaatttaacctaacaaattccatct 21969013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 21991495 - 21991449
Alignment:
Q  422 atttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  21991495 atttgctgtattaggttagcagtaatttaacctaacaaattccatct 21991449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 18094975 - 18095056
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||| |||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  18094975 ggtctgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcaatgatttaacctaacaaattccatct 18095056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 47503289 - 47503232
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  47503289 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 47503232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 24365777 - 24365834
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||| | ||||| ||| ||| | |||||||||||| ||||||||||    
T  24365777 ttttcccgctcatttgatttattaggtttgcaattatttaacctaacgaatttcatct 24365834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 468
Target Start/End: Complemental strand, 36643210 - 36643133
Alignment:
Q  391 tgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||| |||| |||  |||| ||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  36643210 tgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 36643133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 837289 - 837209
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||| |||| |||| |||  |||| ||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  837289 gtctgcaacaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 837209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 46451490 - 46451570
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||| ||| |||| |||  |||||||| ||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  46451490 gtctgcagtaatttaacctaattttttcccgttcatttgctttattaggtttgcaattatttaacctaacaaattccatct 46451570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 463
Target Start/End: Original strand, 51654087 - 51654139
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaattt 463  Q
    |||||||||||||||||| ||||| |||  || | ||||||||||||||||||    
T  51654087 ttttcccgctcatttgttttattaggtttacaattatttaacctaacaaattt 51654139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 496
Target Start/End: Original strand, 4454943 - 4455052
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatc 486  Q
    |||||||| |||  |||| ||| |||||||| |  ||||| ||||||| ||||||||||||||||||||||||||| |||||       |||||| ||||    
T  4454943 ggtctgcaacaacttaacctaatattttccctccaatttgctgtattaggttagcagtaatttaacctaacaaattccatctaaaaaaatgcatcgcatc 4455042  T
Q  487 aatttcattc 496  Q
    ||||||||||    
T  4455043 aatttcattc 4455052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 16671624 - 16671705
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  16671624 ggtctgcagcaatataacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 16671705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 17645992 - 17646073
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  17645992 ggtctgcagcaatataacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 17646073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 18486657 - 18486734
Alignment:
Q  391 tgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  18486657 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 18486734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 48640887 - 48640806
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  | |||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  48640887 ggtctgcagcaatttaacctaatttcttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 48640806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 4680981 - 4680901
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  4680981 gtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 4680901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 9142046 - 9141966
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  |||||| ||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  9142046 gtctgcagcaatttaacctaattttttcctgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 9141966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 496
Target Start/End: Original strand, 18487194 - 18487279
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatcaatttcattc 496  Q
    |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||       ||||||||| |||||||||||    
T  18487194 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcacaccaatttcattc 18487279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 11650094 - 11650013
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||| |||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  11650094 ggtctgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 11650013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 16492630 - 16492550
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||||||   |||||| ||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  16492630 ggtctgcagcaatttaacttatttttttcc-gctcatttgctttattatgtttgcaattatttaacctaacaaatttcatct 16492550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 12140946 - 12140866
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  |||| |||||||||||   ||||| ||| ||| | |||||||||||||||||||||||    
T  12140946 gtctgcagcaatttaacctaatttttttccgctcatttgcgttattaggtttgcaattatttaacctaacaaatttcatct 12140866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 16362752 - 16362696
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatc 467  Q
    |||| ||||||||||||| |||||  || ||||| ||||||||||||||||||||||    
T  16362752 tttttccgctcatttgttttattagatttgcagttatttaacctaacaaatttcatc 16362696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 468
Target Start/End: Complemental strand, 23591498 - 23591419
Alignment:
Q  389 tctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||| |||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  23591498 tctgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 23591419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 6173714 - 6173755
Alignment:
Q  149 cagttcattgaaaaattgcatagccataaaattagatgatga 190  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||    
T  6173714 cagtttattgaaaaattgcatagccctaaaattagattatga 6173755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 48641504 - 48641447
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||| ||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  48641504 ttttcctgctcatttgctttattaagtttgcaattatttaacctaacaaatttcatct 48641447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 468
Target Start/End: Complemental strand, 2853270 - 2853222
Alignment:
Q  420 tcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||| ||||| ||| ||| | |||||||||||||||||||||||    
T  2853270 tcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 2853222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 16671294 - 16671346
Alignment:
Q  416 ccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  16671294 ccgctcatttgctctattaggtttgcaattatttaacctaacaaatttcatct 16671346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 17645662 - 17645714
Alignment:
Q  416 ccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  17645662 ccgctcatttgctctattaggtttgcaattatttaacctaacaaatttcatct 17645714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 5428547 - 5428628
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||| ||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  5428547 ggtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 5428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 42497020 - 42496939
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||||||||||||||||| |||||  || ||| | ||||||||||||||||| |||||    
T  42497020 ggtctgcagcaatttaacctaattttttcccgctcatttgttttattagatttgcaattatttaacctaacaaattccatct 42496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 42497378 - 42497297
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||| ||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  42497378 ggtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 42497297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 468
Target Start/End: Original strand, 43761975 - 43762047
Alignment:
Q  396 caatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||| |||| ||| ||||||| | ||||||  ||||||| |||||||||||||||| ||||||||||||||||    
T  43761975 caatttaacctaatattttccggttcattttgtgtattaggttagcagtaatttaatctaacaaatttcatct 43762047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 468
Target Start/End: Complemental strand, 1156149 - 1156071
Alignment:
Q  390 ctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  1156149 ctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 1156071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 16165773 - 16165692
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||| |||||| |||| |||  |||||||| ||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  16165773 ggtctgtagcaatttaacctaattttttcccgatcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 16165692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 21617799 - 21617856
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||||||| | ||||| ||| ||| | |||||||||||||||||||||||    
T  21617799 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 21617856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 42492252 - 42492171
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  ||||||| |||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  42492252 ggtctgcagcaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaacaaattccatct 42492171  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 44262683 - 44262764
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||||| |||| |||  |||| || |||||||| | ||||||||| ||| | ||||||||||||||||| |||||    
T  44262683 ggtctgcagcaatttaacctaatttttttccactcatttgctttattacgtttgcaattatttaacctaacaaattccatct 44262764  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 44263109 - 44263189
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||| |||  |||||||| ||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  44263109 gtctgcagcaatttaacctaattttttcccgttcatttgctttattaggtttgcaattatttaacctaacaaattccatct 44263189  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 51114110 - 51114190
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||| |||||| |||| |||  |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  51114110 gtctgtagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 51114190  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 466
Target Start/End: Complemental strand, 4100648 - 4100593
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcat 466  Q
    |||||||||||||||||| ||||| ||| ||| | ||||||| |||||||||||||    
T  4100648 ttttcccgctcatttgttttattaagtttgcaattatttaacttaacaaatttcat 4100593  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 41462571 - 41462614
Alignment:
Q  425 tgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||    
T  41462571 tgttgcattaggttagcagcaatttaacctaacaaatttcatct 41462614  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 1647562 - 1647643
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||||| | |||| |||| |||| | ||||||||| | ||||| ||| | | | |||||||||||||||||||||||    
T  1647562 ggtctgcagcagtttaacctaagttttttctgctcatttgctttattaggtttggaattatttaacctaacaaatttcatct 1647643  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 6537742 - 6537661
Alignment:
Q  387 ggtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||| ||| |||| ||||||||  |||||||||||||||  | ||||| ||| ||| | ||||||||||||||||| |||||    
T  6537742 ggtcagcaacaatttaacttaattttttcccgctcatttactttattaggtttgcaattatttaacctaacaaattccatct 6537661  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 51113746 - 51113823
Alignment:
Q  391 tgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||||| |||| |||  |||| ||||||||||| | |||||  || ||| | |||||||||||||||||||||||    
T  51113746 tgcagcaatttaacctaatttttttccgctcatttgctttattagatttgcaattatttaacctaacaaatttcatct 51113823  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 498
Target Start/End: Original strand, 51113926 - 51114036
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatca 487  Q
    |||||||||||| |||| |||  |||||||| ||||||  | ||||| ||| ||| | ||||||||||||||||| |||||       |||||| || ||    
T  51113926 gtctgcagcaatttaacctaattttttcccgttcatttactttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcacca 51114025  T
Q  488 atttcattcat 498  Q
    |||||||||||    
T  51114026 atttcattcat 51114036  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 318575 - 318655
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||||||||||| |||  |||  |||| ||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||    
T  318575 gtctgcagcaatttaatctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 318655  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 27296357 - 27296437
Alignment:
Q  388 gtctgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    ||||||| |||| |||| |||  ||||| |||||||||  | ||||| ||| ||| | |||||||||||||||||||||||    
T  27296357 gtctgcaacaatttaacctaattttttctcgctcattttctttattaggtttgcaattatttaacctaacaaatttcatct 27296437  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 196762 - 196705
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatct 468  Q
    |||| ||||||||||| ||||||| |||||  |||||||||||||||||||| |||||    
T  196762 tttttccgctcatttgctgtattaggttaggtgtaatttaacctaacaaattccatct 196705  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 496
Target Start/End: Original strand, 102746 - 102831
Alignment:
Q  411 ttttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaatttcatctnnnnnnntgcatcacatcaatttcattc 496  Q
    |||||||||||||||| | ||||| ||| ||| | ||||||||||||||||| |||||       |||||| ||||||||||||||    
T  102746 ttttcccgctcatttgctttattaagtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcatcaatttcattc 102831  T

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Target: scaffold1333 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1333
Description:

Target: scaffold1333; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 1842 - 1883
Alignment:
Q  101 attctttacgagtaaaatagttaatgaagtgtaaagcatgga 142  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||    
T  1842 attctttacgagtaaaatagttaataaagtgcaaagcttgga 1883  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Complemental strand, 12468 - 12399
Alignment:
Q  391 tgcagcaatctaacttaagattttcccgctcatttgttgtattacgttagcagtaatttaacctaacaaa 460  Q
    ||||||||| |||| |||  |||| ||||||||||||| ||||| ||| ||| | |||||||||||||||    
T  12468 tgcagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaacctaacaaa 12399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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