View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_12 (Length: 488)
Name: NF20885_low_12
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 1319875 - 1320337
Alignment:
| Q |
19 |
catgattttgcgttctcaaaataggtttata-gattatgaattttttaaaacgatcatttgattctatctattagattgttaatctttcaaaaacaaaat |
117 |
Q |
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| T |
1319875 |
catgattttgcgttctcaaaataggtttataagattatgaattttttaaaacgatcatttgattctatctattagattgttaatctttcaaaaaaaaaaa |
1319974 |
T |
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| Q |
118 |
--ctattagattgttaagttgctctttgtatttaaccatttactattaactatcatcaggtaattatatttaaaaaattaactagggcttagttatcaat |
215 |
Q |
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| T |
1319975 |
aactattagattgttaagttgctatttgtatttaaccatttactattaattatcatcaggtcattatatttaaaaaattaactaggt-ttagttatcaat |
1320073 |
T |
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| Q |
216 |
ttagtctctaacatttatcataaagattatataagtaaattttgtcaagagtcatgaccatatttaaaatattaacgttataattctatttgagaacaat |
315 |
Q |
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| T |
1320074 |
ttagtctctaacatttatcataaagattatataagtaaatttcgtcaagagtcatgaccatttttaaaatattaacgttataattctatttgagaacaat |
1320173 |
T |
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| Q |
316 |
ctacaaagtcagaaaaaatatactcacaatgtctaattttaaaatattgtttccatttgtagcctatctgcattgatcttttgtcaaaagatttttggca |
415 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1320174 |
ctaaaaagtcagaaaaaatatactcacaatgtctaattttaaaatattgtttccatttgtagcctatctgcattgatcttttgtcaaaagatttttggca |
1320273 |
T |
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| Q |
416 |
gtggtttgattctctcgttattatcatttttctaccaactccattgttgatgttttatctctgc |
479 |
Q |
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| T |
1320274 |
gtggtttgattctctcgttattatcatttttctaccaactccattgttgatgttttatctctgc |
1320337 |
T |
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