View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_13 (Length: 470)
Name: NF20885_low_13
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 7467706 - 7467451
Alignment:
| Q |
18 |
agccaataccaaagaaatgcataaaattcccaaaagaaagaattgatggacataaaaagtcatttt-gtaggaagaattcctcttaccttataatttttc |
116 |
Q |
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| T |
7467706 |
agccaataccaaagaaatgcataaaactcccaaaagaaagaattgatggacataaaaagtcatttttgtaggaagaatttctcttaccttataattttgc |
7467607 |
T |
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| Q |
117 |
ttttctgatcgtatgaagaattgctaaaccacacattatatagacttaaagttaagactcattcatannnnnnnnaaggggtgttaaaactcactcataa |
216 |
Q |
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| T |
7467606 |
ttttctgatcgtatgaagaattgctaaaccacacattttatagacttaaagttaagactcattcatattttttttaaggggtgttaaaactcactcataa |
7467507 |
T |
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| Q |
217 |
ttactattaaatttgccttaattattccataaaattgtcataattacaaattatta |
272 |
Q |
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| T |
7467506 |
ttactattaaatttgccttaattattccataaaattgtcataattacaaattatta |
7467451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 329 - 451
Target Start/End: Complemental strand, 7467412 - 7467280
Alignment:
| Q |
329 |
ttatgagacatgttaactaatgtcttaggtgcacaagttaatgaaat----------nnnnnnnnngtaagttttatattgaaacttgaaagtaacaatt |
418 |
Q |
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| T |
7467412 |
ttatgagacatgttaactaatgtcttaggtgcacaaattaatgaaataaaataaataaaaaaaaaagtaagttttgtattgaaacttgaaagtaacaatt |
7467313 |
T |
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| Q |
419 |
tttatacttttaagagtttcactacacaagtat |
451 |
Q |
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| T |
7467312 |
tttatacttttaagagtttcactacacaagtat |
7467280 |
T |
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