View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_low_16 (Length: 451)
Name: NF20885_low_16
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 24 - 434
Target Start/End: Complemental strand, 12000632 - 12000242
Alignment:
| Q |
24 |
aaagaggcggcaattgaagtaataaaagaaacaattgaagaaacacctcattatcaaccactgtctttgcagagtgcttaatgttggggagaaagattcc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12000632 |
aaagaggcggcaattgaagtaataaaagaaacaattgaagaaacacctcattatcaaccactgtctttgcaga-------------------aagattcc |
12000552 |
T |
|
| Q |
124 |
agttaatctttgaatgtgtgt--tttcttttgggtttgagatttataatgtatgctattgttatatcgatcgagttgaaaatttggctaaaagcatcata |
221 |
Q |
| |
|
|||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
12000551 |
agttcagctttgaatgtgtgtgttttcttttgggtttgagatttataatgtatgctattgttatatcgatcgagttgaaaatttggctataagcgtcata |
12000452 |
T |
|
| Q |
222 |
taaatgtatgtttgttgtcttaataattgctgaactgaactagtatgaagcatattaccatacaccgataagaactcggcttcaaaatctttctatcaga |
321 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
12000451 |
taaatgtatgtttgttgtcttaatcattg---aactgaactagtatgaagcatattaccatatactgataagaactcggcttcaaaatctttctatcaga |
12000355 |
T |
|
| Q |
322 |
attttgataacattttagggtaaaaggagacggttagtatagacactaaacttgacactaaaaattgaaataagattcattaacagaacaaataaactta |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12000354 |
attttgataacattttagggtaaaaggagacggttagtttagacactaaacttgacactaaaaattgaaataagattcattaacagaacaaataaactta |
12000255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University