View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_low_17 (Length: 441)

Name: NF20885_low_17
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_low_17
NF20885_low_17
[»] chr8 (13 HSPs)
chr8 (127-425)||(42244035-42244334)
chr8 (57-127)||(42245807-42245877)
chr8 (1-48)||(28088372-28088419)
chr8 (1-48)||(3734691-3734738)
chr8 (1-48)||(4718731-4718778)
chr8 (1-48)||(15259474-15259521)
chr8 (1-48)||(18532193-18532240)
chr8 (1-48)||(27746403-27746450)
chr8 (1-48)||(34237723-34237770)
chr8 (1-48)||(39349342-39349389)
chr8 (1-48)||(42328090-42328137)
chr8 (1-43)||(6953080-6953122)
chr8 (1-43)||(21667636-21667678)
[»] chr6 (11 HSPs)
chr6 (1-48)||(17081122-17081169)
chr6 (1-43)||(5360144-5360186)
chr6 (1-48)||(654214-654261)
chr6 (1-48)||(3222703-3222750)
chr6 (1-48)||(9690706-9690753)
chr6 (1-48)||(11448953-11449000)
chr6 (1-48)||(15360166-15360213)
chr6 (1-48)||(21148578-21148625)
chr6 (1-43)||(12390507-12390549)
chr6 (1-43)||(34147428-34147470)
chr6 (1-43)||(34160044-34160086)
[»] chr4 (16 HSPs)
chr4 (1-48)||(32986279-32986326)
chr4 (1-48)||(5609270-5609317)
chr4 (1-48)||(33696347-33696394)
chr4 (1-48)||(55961821-55961868)
chr4 (1-46)||(29875845-29875890)
chr4 (1-48)||(9517709-9517756)
chr4 (1-48)||(20078052-20078099)
chr4 (1-48)||(32990517-32990564)
chr4 (1-48)||(34844826-34844873)
chr4 (1-48)||(35674809-35674856)
chr4 (1-48)||(40058920-40058967)
chr4 (5-48)||(44343600-44343643)
chr4 (1-43)||(18875589-18875631)
chr4 (1-43)||(25852296-25852338)
chr4 (1-43)||(35229249-35229291)
chr4 (1-41)||(27528870-27528910)
[»] chr7 (17 HSPs)
chr7 (1-49)||(10091274-10091322)
chr7 (1-48)||(2103141-2103188)
chr7 (1-48)||(19421317-19421364)
chr7 (1-48)||(23012576-23012623)
chr7 (1-48)||(27009445-27009492)
chr7 (1-48)||(29861756-29861803)
chr7 (1-46)||(42814950-42814995)
chr7 (1-48)||(2751357-2751404)
chr7 (1-48)||(18044193-18044240)
chr7 (1-48)||(21835237-21835284)
chr7 (1-48)||(22119974-22120021)
chr7 (1-48)||(23092182-23092229)
chr7 (1-48)||(40542978-40543025)
chr7 (1-43)||(654777-654819)
chr7 (1-43)||(7175935-7175977)
chr7 (1-43)||(7275363-7275405)
chr7 (1-43)||(22643415-22643457)
[»] chr5 (11 HSPs)
chr5 (1-49)||(7085693-7085741)
chr5 (1-48)||(11926570-11926617)
chr5 (1-48)||(15641173-15641220)
chr5 (1-48)||(19456278-19456325)
chr5 (1-48)||(32059508-32059555)
chr5 (1-47)||(9659380-9659426)
chr5 (1-43)||(15971195-15971237)
chr5 (1-43)||(25587014-25587056)
chr5 (1-43)||(30485910-30485952)
chr5 (1-43)||(38684290-38684332)
chr5 (1-49)||(6014347-6014395)
[»] scaffold0623 (1 HSPs)
scaffold0623 (1-48)||(1124-1171)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-48)||(10761-10808)
[»] scaffold0366 (2 HSPs)
scaffold0366 (1-48)||(9367-9414)
scaffold0366 (1-48)||(12068-12115)
[»] chr1 (15 HSPs)
chr1 (1-48)||(7766795-7766842)
chr1 (1-43)||(1378980-1379022)
chr1 (1-43)||(46607892-46607934)
chr1 (6-47)||(40145955-40145996)
chr1 (1-49)||(4621304-4621352)
chr1 (1-49)||(15059469-15059517)
chr1 (1-48)||(7578491-7578538)
chr1 (1-48)||(8254820-8254867)
chr1 (1-48)||(24122105-24122152)
chr1 (1-48)||(24674475-24674522)
chr1 (1-43)||(8077729-8077771)
chr1 (1-43)||(9500428-9500470)
chr1 (1-47)||(30677258-30677304)
chr1 (7-47)||(26820275-26820315)
chr1 (1-49)||(32729627-32729674)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-43)||(97439-97481)
[»] chr3 (14 HSPs)
chr3 (1-47)||(51532871-51532917)
chr3 (1-48)||(8456218-8456265)
chr3 (1-48)||(10083887-10083934)
chr3 (1-48)||(10190810-10190857)
chr3 (1-48)||(25289782-25289829)
chr3 (1-48)||(26108374-26108421)
chr3 (1-48)||(30807221-30807268)
chr3 (1-48)||(35492993-35493040)
chr3 (1-48)||(40133517-40133564)
chr3 (1-48)||(40940907-40940954)
chr3 (1-48)||(49258330-49258377)
chr3 (5-47)||(11390688-11390730)
chr3 (1-43)||(15566572-15566614)
chr3 (7-43)||(14343361-14343397)
[»] chr2 (12 HSPs)
chr2 (1-47)||(17324848-17324894)
chr2 (1-43)||(24196086-24196128)
chr2 (1-43)||(44946126-44946168)
chr2 (1-48)||(5394099-5394146)
chr2 (1-48)||(35171882-35171929)
chr2 (1-47)||(23787077-23787123)
chr2 (1-43)||(27269417-27269459)
chr2 (1-43)||(27290670-27290712)
chr2 (1-43)||(30466903-30466945)
chr2 (1-47)||(36390637-36390683)
chr2 (1-43)||(41314074-41314116)
chr2 (2-46)||(19054108-19054152)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-45)||(32370-32414)
[»] scaffold0576 (1 HSPs)
scaffold0576 (1-48)||(5150-5197)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-48)||(40407-40454)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-48)||(161891-161938)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 127 - 425
Target Start/End: Complemental strand, 42244334 - 42244035
Alignment:
Q  127 tgactataaggaaaaccacgcacataagtcatcaagtgaacgctatgcataagaatgcttataatatggactcaaatataagcaaaaataat-atttgtt 225  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||    
T  42244334 tgactataaggaaaaccatgcacataagtcatcaagtgaatgctatgcataagagggcttataatatggactcaaatataagcaaaaataatcatttgtt 42244235  T
Q  226 tgtttaaaatctgggtgttatatataataaggataaaaaatcttttcttttttagtaaatcaaacgtatcttctgtgcgtgactataaagactaatcatt 325  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42244234 tgcttaaaatctgggtgttatatataataaggataaaaaatcttttcttttttagtaaatcaaacgtatcttctgtgcgtgactataaagactaatcatt 42244135  T
Q  326 ttaaggtcattgagatttatttaaaaggttgatctcttgcaacaaatggtttttcatgcactaaccaatgatcaaatcttggaccaaatagttaagagat 425  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42244134 ttaaggttattgagatttatttaaaaggttgatctcttacaacaaatgttttttcatgcactaaccaatgatcaaatcttggaccaaataattaagagat 42244035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 42245877 - 42245807
Alignment:
Q  57 tcactctgtctcatattatttgttttttaattatcaatgatgcatattcattatctaagtgaaactaacat 127  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42245877 tcactatgtctcatattatttgttttttaattatcaatgatgcatattcattatttaagtgaaactaacat 42245807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28088372 - 28088419
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||||    
T  28088372 tttcggtgggttaagtccatacagagcttgctctgactttaaatgggg 28088419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3734738 - 3734691
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  3734738 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 3734691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4718731 - 4718778
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  4718731 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 4718778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15259521 - 15259474
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  15259521 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 15259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18532193 - 18532240
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    |||||||||||||||||||||||| ||||||||||  |||||| ||||    
T  18532193 tttcggtgggctaagtccatacagaacttgctctggatttaaacgggg 18532240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27746450 - 27746403
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  27746450 tttcggtgggctaagtccatacagagcttgctctggctttaaaagggg 27746403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34237770 - 34237723
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  34237770 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 34237723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39349342 - 39349389
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  39349342 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 39349389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42328090 - 42328137
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  42328090 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 42328137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6953122 - 6953080
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  6953122 tttcggtgggctaagtccatacagagcttgctctggctttaaa 6953080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21667636 - 21667678
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  21667636 tttcggtgggctaagtccatacagagcttgctctgcctttaaa 21667678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17081169 - 17081122
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  17081169 tttcggtgggctaagtccatacagagcttgctctgactttaaatgggg 17081122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5360186 - 5360144
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  5360186 tttcggtgggctaagtccatacagagcttgctctgactttaaa 5360144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 654261 - 654214
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  654261 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 654214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3222750 - 3222703
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  3222750 tttcggtgggctaagtccatacagagcttgctctgtctttaaacgggg 3222703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9690753 - 9690706
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  9690753 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 9690706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11448953 - 11449000
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  11448953 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 11449000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15360213 - 15360166
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  15360213 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 15360166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21148625 - 21148578
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||| ||||||||||||||||||  ||||||||||||||||| ||||    
T  21148625 tttcgatgggctaagtccatacagagcttgctctgactttaaacgggg 21148578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12390507 - 12390549
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  12390507 tttcggtgggctaagtccatacagagcttgctctggctttaaa 12390549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34147428 - 34147470
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  34147428 tttcggtgggctaagtccatacagagcttgctctggctttaaa 34147470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34160044 - 34160086
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  34160044 tttcggtgggctaagtccatacagagcttgctctggctttaaa 34160086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32986279 - 32986326
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  32986279 tttcggtgggctaagtccatacagagcttgctctgactttaaatgggg 32986326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5609317 - 5609270
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  5609317 tttcggtgggctaagtccatacagagcttgctctggctttaaatgggg 5609270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33696394 - 33696347
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  33696394 tttcggtgggctaagtccatacagagcttgctctggctttaaatgggg 33696347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 55961868 - 55961821
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  55961868 tttcggtgggctaagtccatacagagcttgctctgactttaaacgggg 55961821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29875890 - 29875845
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgg 46  Q
    ||||||||||||||||||||||||  |||| |||||||||||||||    
T  29875890 tttcggtgggctaagtccatacagagcttgttctgactttaaatgg 29875845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9517756 - 9517709
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    |||| |||||||||||||||||||  ||||||||||||||||| ||||    
T  9517756 tttcagtgggctaagtccatacagagcttgctctgactttaaacgggg 9517709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20078099 - 20078052
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  20078099 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 20078052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32990517 - 32990564
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  32990517 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 32990564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34844873 - 34844826
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  34844873 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 34844826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35674856 - 35674809
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  35674856 tttcggtgggctaagtccatacagagcttgctctgcctttaaacgggg 35674809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40058967 - 40058920
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  40058967 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 40058920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 44343600 - 44343643
Alignment:
Q  5 ggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||    
T  44343600 ggtgggctaagtccatacagagcttgctctgactttaaacgggg 44343643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18875631 - 18875589
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  18875631 tttcggtgggctaagtccatacagagcttgctctggctttaaa 18875589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25852296 - 25852338
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  25852296 tttcggtgggctaagtccatacagagcttgctctggctttaaa 25852338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35229249 - 35229291
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    |||||||||||||||||||||||   |||||||||||||||||    
T  35229249 tttcggtgggctaagtccatacatagcttgctctgactttaaa 35229291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27528910 - 27528870
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgacttta 41  Q
    ||||||||||||||||||||||||  ||||||||| |||||    
T  27528910 tttcggtgggctaagtccatacagagcttgctctggcttta 27528870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10091274 - 10091322
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggggt 49  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  10091274 tttcggtgggctaagtccatacagagcttgctctggctttaaatggggt 10091322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2103141 - 2103188
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  2103141 tttcggtgggctaagtccatacagagcttgctctggctttaaatgggg 2103188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19421317 - 19421364
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  19421317 tttcgatgggctaagtccatacagagcttgctctgactttaaatgggg 19421364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23012623 - 23012576
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  23012623 tttcggtgggctaagtccatacagagcttgctctggctttaaatgggg 23012576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27009445 - 27009492
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  27009445 tttcggtgggctaagtccatacagagcttgctctgactttaaacgggg 27009492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29861756 - 29861803
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    |||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  29861756 tttcggtgggctaagtccatacagaacttgctctggctttaaacgggg 29861803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42814950 - 42814995
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgg 46  Q
    |||||||||||||||||||||||   ||||||||||||||||||||    
T  42814950 tttcggtgggctaagtccatacaaagcttgctctgactttaaatgg 42814995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2751357 - 2751404
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  2751357 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 2751404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18044193 - 18044240
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  18044193 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 18044240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21835237 - 21835284
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  21835237 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 21835284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22119974 - 22120021
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  22119974 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 22120021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23092182 - 23092229
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  23092182 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 23092229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40543025 - 40542978
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  40543025 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 40542978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 654819 - 654777
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  654819 tttcggtgggctaagtccatacagagcttgctctggctttaaa 654777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7175977 - 7175935
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  7175977 tttcggtgggctaagtccatacagagcttgctctggctttaaa 7175935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7275363 - 7275405
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  7275363 tttcggtgggctaagtccatacagagcttgctctggctttaaa 7275405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22643457 - 22643415
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||| ||||||||||||||||  |||||||||||||||||    
T  22643457 tttcggtaggctaagtccatacagagcttgctctgactttaaa 22643415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7085741 - 7085693
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggggt 49  Q
    ||||||||||||||||||||||||  ||||||||||||||||| |||||    
T  7085741 tttcggtgggctaagtccatacagagcttgctctgactttaaacggggt 7085693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11926617 - 11926570
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  11926617 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 11926570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15641220 - 15641173
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  15641220 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 15641173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19456325 - 19456278
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  19456325 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 19456278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32059555 - 32059508
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  32059555 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 32059508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9659426 - 9659380
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggg 47  Q
    |||||||||||||||||||||||   ||||||||| |||||||||||    
T  9659426 tttcggtgggctaagtccatacacagcttgctctggctttaaatggg 9659380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15971237 - 15971195
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    |||||||||||||||||||||||   |||||||||||||||||    
T  15971237 tttcggtgggctaagtccatacatagcttgctctgactttaaa 15971195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25587014 - 25587056
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  25587014 tttcggtgggctaagtccatacagagcttgctctggctttaaa 25587056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30485910 - 30485952
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  30485910 tttcggtgggctaagtccatacagagcttgctctggctttaaa 30485952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38684290 - 38684332
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  38684290 tttcggtgggctaagtccatacagagcttgctctggctttaaa 38684332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6014395 - 6014347
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggggt 49  Q
    |||||||||| |||||||||||||  ||||||||| ||||||| |||||    
T  6014395 tttcggtgggttaagtccatacagagcttgctctggctttaaacggggt 6014347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1171 - 1124
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  1171 tttcggtgggctaagtccatacagagcttgctctggctttaaatgggg 1124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10808 - 10761
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  10808 tttcggtgggctaagtccatacagagcttgctctggctttaaatgggg 10761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9414 - 9367
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  9414 tttcggtgggctaagtccatacagagcttgctctggctttaaatgggg 9367  T

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Target: scaffold0366; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12115 - 12068
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  12115 tttcggtgggctaagtccatacagagcttgctctggctttaaatgggg 12068  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7766842 - 7766795
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  7766842 tttcggtgggctaagtccatacagagcttgctctgactttaaacgggg 7766795  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1378980 - 1379022
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    |||||||||||||||||||||||| |||||||||| |||||||    
T  1378980 tttcggtgggctaagtccatacagaacttgctctggctttaaa 1379022  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 46607892 - 46607934
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  46607892 tttcggtgggctaagtccatacagagcttgctctgactttaaa 46607934  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 40145996 - 40145955
Alignment:
Q  6 gtgggctaagtccatacagtacttgctctgactttaaatggg 47  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  40145996 gtgggctaagtccatacagagcttgctctgactttaaatggg 40145955  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4621352 - 4621304
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggggt 49  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| |||||    
T  4621352 tttcggtgggctaagtccatacagagcttgctctggctttaaacggggt 4621304  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15059517 - 15059469
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggggt 49  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| |||||    
T  15059517 tttcggtgggctaagtccatacagagcttgctctggctttaaacggggt 15059469  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7578491 - 7578538
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    |||||||||||||||||||||||   ||||||||||||||||| ||||    
T  7578491 tttcggtgggctaagtccatacaaagcttgctctgactttaaacgggg 7578538  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8254867 - 8254820
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    |||||||||||||||| ||||||| |||||||||| ||||||| ||||    
T  8254867 tttcggtgggctaagttcatacagaacttgctctggctttaaacgggg 8254820  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24122105 - 24122152
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  24122105 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 24122152  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24674475 - 24674522
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  24674475 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 24674522  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8077729 - 8077771
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  8077729 tttcggtgggctaagtccatacagagcttgctctggctttaaa 8077771  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9500470 - 9500428
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  9500470 tttcggtgggctaagtccatacagagcttgctctggctttaaa 9500428  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30677258 - 30677304
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggg 47  Q
    ||||||||||||||||||||||||  |||||| || |||||||||||    
T  30677258 tttcggtgggctaagtccatacagagcttgctttggctttaaatggg 30677304  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 26820275 - 26820315
Alignment:
Q  7 tgggctaagtccatacagtacttgctctgactttaaatggg 47  Q
    |||| ||||||||||||| |||||||||| |||||||||||    
T  26820275 tgggttaagtccatacagaacttgctctgcctttaaatggg 26820315  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32729627 - 32729674
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggggt 49  Q
    ||||||||||| ||||||||||||  ||||||||| |||||||||||||    
T  32729627 tttcggtgggc-aagtccatacagagcttgctctggctttaaatggggt 32729674  T

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Target: scaffold0026 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 97481 - 97439
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  97481 tttcggtgggctaagtccatacagagcttgctctgactttaaa 97439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51532871 - 51532917
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggg 47  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||    
T  51532871 tttcggtgggctaagtccatacagagcttgctctaactttaaatggg 51532917  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8456265 - 8456218
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  8456265 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 8456218  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10083934 - 10083887
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  10083934 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 10083887  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10190857 - 10190810
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  10190857 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 10190810  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25289829 - 25289782
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  25289829 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 25289782  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26108374 - 26108421
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  26108374 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 26108421  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30807268 - 30807221
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  30807268 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 30807221  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35492993 - 35493040
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  35492993 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 35493040  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40133564 - 40133517
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  40133564 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 40133517  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40940907 - 40940954
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  40940907 tttcggtggactaagtccatacagagcttgctctgactttaaacgggg 40940954  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 49258377 - 49258330
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  49258377 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 49258330  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 11390688 - 11390730
Alignment:
Q  5 ggtgggctaagtccatacagtacttgctctgactttaaatggg 47  Q
    ||||||||||||||||||||  ||||||||| |||||||||||    
T  11390688 ggtgggctaagtccatacagagcttgctctgtctttaaatggg 11390730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15566614 - 15566572
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  15566614 tttcggtgggctaagtccatacagagcttgctctggctttaaa 15566572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 14343397 - 14343361
Alignment:
Q  7 tgggctaagtccatacagtacttgctctgactttaaa 43  Q
    |||||||||||||||||| |||||||||| |||||||    
T  14343397 tgggctaagtccatacagaacttgctctgcctttaaa 14343361  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17324848 - 17324894
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggg 47  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||    
T  17324848 tttcggtgggctaagtccatacagagcttgctctggctttaaatggg 17324894  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24196086 - 24196128
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    |||||||||||||||||||||||| |||||||||| |||||||    
T  24196086 tttcggtgggctaagtccatacagaacttgctctggctttaaa 24196128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44946168 - 44946126
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    |||||||||||||||||||||||| |||||||||| |||||||    
T  44946168 tttcggtgggctaagtccatacagaacttgctctggctttaaa 44946126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5394099 - 5394146
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||| ||||||||||||||||||   |||||||||||||||||||||    
T  5394099 tttcgatgggctaagtccatacagagtttgctctgactttaaatgggg 5394146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35171882 - 35171929
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  35171882 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 35171929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23787123 - 23787077
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggg 47  Q
    |||||||||||||| |||||||||   ||||||||||||||||||||    
T  23787123 tttcggtgggctaaatccatacagagtttgctctgactttaaatggg 23787077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27269459 - 27269417
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||| || |||||||||| |||||||    
T  27269459 tttcggtgggctaagtccatatagaacttgctctggctttaaa 27269417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27290670 - 27290712
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  27290670 tttcggtgggctaagtccatacagagcttgctctggctttaaa 27290712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30466945 - 30466903
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  30466945 tttcggtgggctaagtccatacagagcttgctctggctttaaa 30466903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36390683 - 36390637
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatggg 47  Q
    ||||||||| |||||||||||||   |||||||||||||||||||||    
T  36390683 tttcggtggactaagtccatacaaagcttgctctgactttaaatggg 36390637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41314074 - 41314116
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaa 43  Q
    ||||||||||||||||| ||||||  |||||||||||||||||    
T  41314074 tttcggtgggctaagtctatacagagcttgctctgactttaaa 41314116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 19054108 - 19054152
Alignment:
Q  2 ttcggtgggctaagtccatacagtacttgctctgactttaaatgg 46  Q
    |||||||||||||||||||||||  |||||| || ||||||||||    
T  19054108 ttcggtgggctaagtccatacagagcttgctttggctttaaatgg 19054152  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32370 - 32414
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatg 45  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||    
T  32370 tttcggtgggctaagtccatacagagcttgctctggctttaaatg 32414  T

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Target: scaffold0576 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5197 - 5150
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  5197 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 5150  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40407 - 40454
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||| ||||    
T  40407 tttcggtgggctaagtccatacagagcttgctctggctttaaacgggg 40454  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 161891 - 161938
Alignment:
Q  1 tttcggtgggctaagtccatacagtacttgctctgactttaaatgggg 48  Q
    ||||||||||||||||||||||||  ||||||||| |||| |||||||    
T  161891 tttcggtgggctaagtccatacagagcttgctctggcttttaatgggg 161938  T

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