View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_18 (Length: 429)
Name: NF20885_low_18
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 13979228 - 13979631
Alignment:
| Q |
19 |
cttataccaatacagatgatgagagatatcattgacaaagaaatgtaaaacagttgagggtactcatcacctgacataattggagtttttagatcctaca |
118 |
Q |
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| T |
13979228 |
cttataccaatacagatgatgagagatatcattgacaaagaaatgtaaaacagttgagggtactcatcacctgacataattggagtttttagatcctaca |
13979327 |
T |
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| Q |
119 |
agatgctgtttggtataattgtagcctattttgggacagaattgaagtgccaaccaattcatatgaatttggcttttcaagttcaaatatgtatgattaa |
218 |
Q |
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| T |
13979328 |
agatgctgtttggtataattgtagcctattttgggacagaattgaagtgccaaccaattcatatgaatttggcttttcaagttcaaatatgtatgattaa |
13979427 |
T |
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| Q |
219 |
ttatgtaatgtttgaggtcgacatatgttgtagggtatcacatgtgatgttcaatagaaagacattgtgacattattgtaagtgtattcaattcatccaa |
318 |
Q |
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| T |
13979428 |
ttatgtaatgtttgaggtcgacatatgttgtagggtatcacatgtgatgttcaatagaaagacattgtgacattattgtaagtgtattcaattcatccaa |
13979527 |
T |
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| Q |
319 |
tataaaatttgttatttgaaaatgaccatctttgtctaagatgtgagtttagtttagatgttttgtcgaaaggtccatgttagatggtgatattgttcat |
418 |
Q |
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| T |
13979528 |
tataaaatttgttatttgaaaatgaccatctttgtctaagatgtgagtttagtttagatgttttgtcgaaaggtccatgttagatggtgatattgttcat |
13979627 |
T |
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| Q |
419 |
ctca |
422 |
Q |
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| T |
13979628 |
ctca |
13979631 |
T |
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