View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_20 (Length: 423)
Name: NF20885_low_20
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 52420602 - 52420771
Alignment:
| Q |
67 |
aaaatatactgaaggaagttaaatccaaatctaattcagctgattcttctatcatgaaaactctggctggtggcagtgttgctaattcaattcttggttt |
166 |
Q |
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| T |
52420602 |
aaaatatactgaaggaagttaaatccaaatctaattcggctgattcttctgtcatgaaaactctggctggtggcagtgttgctaatacaattcgtggtct |
52420701 |
T |
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| Q |
167 |
tagtagcgattttggaatttccagtggaattattggggcttgtggagatgatgaacaaggccaattattt |
236 |
Q |
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| T |
52420702 |
tagtagtggttttggaatttccagtggaattattggggcttgtggtgatgatgaacaaggtcaattattt |
52420771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 45508924 - 45509017
Alignment:
| Q |
256 |
tcatctcttgcatttgcattattgactttgccttggcccttagccatatgcattttagatctataacagagagaattgggaaaaatcatatcag |
349 |
Q |
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| T |
45508924 |
tcatctcttgcatttgcattattgactttgccttagcccttagccatacgcattttagatctatgactgagggaattgggaaaaatcatatcag |
45509017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 349
Target Start/End: Complemental strand, 19845485 - 19845385
Alignment:
| Q |
256 |
tcatctcttgcatttgcattattgactttg-------ccttggcccttagccatatgcattttagatctataacagagagaattgggaaaaatcatatca |
348 |
Q |
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| T |
19845485 |
tcatctcttgcatttgcattattgactttgccttagcccttagcccttagccatacgcattttagatctatgactgagggaattggtaaaaatcatatca |
19845386 |
T |
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| Q |
349 |
g |
349 |
Q |
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| T |
19845385 |
g |
19845385 |
T |
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