View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_low_22 (Length: 423)

Name: NF20885_low_22
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_low_22
NF20885_low_22
[»] chr2 (2 HSPs)
chr2 (19-414)||(41676097-41676493)
chr2 (332-399)||(13366503-13366570)
[»] chr4 (1 HSPs)
chr4 (103-250)||(14509476-14509623)
[»] scaffold0024 (2 HSPs)
scaffold0024 (103-324)||(129814-130042)
scaffold0024 (103-188)||(130763-130849)
[»] chr7 (2 HSPs)
chr7 (332-394)||(38071372-38071434)
chr7 (38-88)||(38071303-38071353)
[»] chr8 (4 HSPs)
chr8 (23-88)||(44544858-44544924)
chr8 (42-88)||(3006993-3007039)
chr8 (332-373)||(44544942-44544983)
chr8 (335-399)||(39642125-39642189)
[»] scaffold0035 (1 HSPs)
scaffold0035 (42-88)||(73885-73931)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 41676097 - 41676493
Alignment:
Q  19 gggaatggatctcctccgtgagattttcactggactctctcctgttttaatctccacccttaaatgcatcnnnnnnnnnnnnnctcttaagttgattgtt 118  Q
    ||||||||||| ||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||             |||||||||||||||||    
T  41676097 gggaatggatcccctccgtgagattttcattggactctct--tgttttaatctccacccttaaatgcatctttttccttttttctcttaagttgattgtt 41676194  T
Q  119 tgaaatgatcaaatttttatagggcattttgttccaagaaacatttgaatatttacaagatggattttgaagtaat---gaagtggataaatgaggatta 215  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  41676195 tgaaatgatcaaatttttatagtgtattttgttccaagaaacatttgaatatttacaagatggattttgaagtaataatgaagtggataaatggggatta 41676294  T
Q  216 tttaagagataaaactatgttcttagggggtaaggattatgctatgnnnnnnntcaggtaaatgggaacatctaagcaagtgtttgggttaccttgagac 315  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||       ||||||||||||| |||||||||||||||||||||||||||||||||    
T  41676295 tttaagagataaaactgtgttcttagggggtaaggattctgctatgaaaaaaatcaggtaaatggggacatctaagcaagtgtttgggttaccttgagac 41676394  T
Q  316 atacctgcttgaagaattctctctcattgcaatttaagagatgaaaattcactggactctactgtcacatgagacaatcatctcgcatgttggtctctg 414  Q
    |||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| || |||||||    
T  41676395 atacctgcttaaagaattctctctcattgcaatttaagggatggaaattcactggactctactgtcacatgagacaatcatctctcattttagtctctg 41676493  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 399
Target Start/End: Complemental strand, 13366570 - 13366503
Alignment:
Q  332 ttctctctcattgcaatttaagagatgaaaattcactggactctactgtcacatgagacaatcatctc 399  Q
    |||||||||||||||| | |||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  13366570 ttctctctcattgcaaatcaagagatggaaattcactgaactctaatgtcacatgagacaatcctctc 13366503  T

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Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 14509623 - 14509476
Alignment:
Q  103 tcttaagttgattgtttgaaatgatcaaatttttatagggcattttgttccaagaaacatttgaatatttacaagatggattttgaagtaatgaagtgga 202  Q
    ||||||||||||||||| || ||||||| ||||||| |   |||||||||| |||| |||||||||||||| |||| ||||||||| |||||||||||||    
T  14509623 tcttaagttgattgtttcaattgatcaactttttattgttgattttgttccgagaagcatttgaatatttaaaagacggattttgatgtaatgaagtgga 14509524  T
Q  203 taaatgaggattatttaagagataaaactatgttcttagggggtaagg 250  Q
    || ||| |||| ||||| ||||||||| ||| ||||||||||||||||    
T  14509523 tatatgtggataatttatgagataaaattatattcttagggggtaagg 14509476  T

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Target: scaffold0024 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 324
Target Start/End: Complemental strand, 130042 - 129814
Alignment:
Q  103 tcttaagttgattgtttgaaatgatcaaatttttatagggcattttgttccaagaaacatttgaatatttacaagatggattttgaagtaatgaagtgga 202  Q
    ||||||||||||||||| |||||||||| ||||||| |   |||||||||  ||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  130042 tcttaagttgattgtttcaaatgatcaactttttattgttgattttgttcggagaaacatttgaatatttaaaagatggattttgatgtaataaagtgga 129943  T
Q  203 ta---aatgaggattatttaagagataaaactatgttcttagggggtaagg---attatgctatgnnnnnnntcaggtaaatgggaacatctaagcaa-- 294  Q
    ||   |||| |||| ||||||||||||||| ||| ||||||| || |||||   ||| |||||||        ||||||||| || ||||||||||||      
T  129942 taaataatgtggataatttaagagataaaattatattcttagcggataagggtcattctgctatgaagaaac-caggtaaatcgggacatctaagcaact 129844  T
Q  295 gtgtttgggttaccttgagacatacctgct 324  Q
    |||| || |||||||||||||||| |||||    
T  129843 gtgtgtgtgttaccttgagacatatctgct 129814  T

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Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 130763 - 130849
Alignment:
Q  103 tcttaagttgattgtttgaaatgatcaaatttttatagggcattttgttccaagaaa-catttgaatatttacaagatggattttga 188  Q
    ||||||||| || |||| |||| | ||| ||||||| |   |||||||||| | ||| |||||||||||||||||||||||||||||    
T  130763 tcttaagttaatggtttcaaataaccaactttttattgttgattttgttcctaaaaagcatttgaatatttacaagatggattttga 130849  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 394
Target Start/End: Original strand, 38071372 - 38071434
Alignment:
Q  332 ttctctctcattgcaatttaagagatgaaaattcactggactctactgtcacatgagacaatc 394  Q
    |||||||||||||||| | ||| |||| ||||||||| ||||||| |||||||||||||||||    
T  38071372 ttctctctcattgcaaatcaagggatggaaattcactcgactctaatgtcacatgagacaatc 38071434  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 38071303 - 38071353
Alignment:
Q  38 gagattttcactggactctctcctgttttaatctccacccttaaatgcatc 88  Q
    ||||||||||| ||| ||||||| ||||||||| ||| |||||||||||||    
T  38071303 gagattttcaccggattctctccggttttaatccccatccttaaatgcatc 38071353  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 44544858 - 44544924
Alignment:
Q  23 atggatctcctcc-gtgagattttcactggactctctcctgttttaatctccacccttaaatgcatc 88  Q
    ||||||||||||| ||||| |||||||  || ||||||| ||||||||||||||| |||||||||||    
T  44544858 atggatctcctccagtgaggttttcacatgattctctccagttttaatctccacctttaaatgcatc 44544924  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 3007039 - 3006993
Alignment:
Q  42 ttttcactggactctctcctgttttaatctccacccttaaatgcatc 88  Q
    |||||||| |||||||||  || ||||||||||||||||||||||||    
T  3007039 ttttcacttgactctctcgagtattaatctccacccttaaatgcatc 3006993  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 44544942 - 44544983
Alignment:
Q  332 ttctctctcattgcaatttaagagatgaaaattcactggact 373  Q
    |||||||||||||||| | |||||||| ||||||||||||||    
T  44544942 ttctctctcattgcaaatcaagagatggaaattcactggact 44544983  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 39642189 - 39642125
Alignment:
Q  335 tctctcattgcaatttaagagatgaaaattcactggactctactgtcacatgagacaatcatctc 399  Q
    ||||||||||||  | ||| |||| |||||||||||||||||  |||||| ||||||||| ||||    
T  39642189 tctctcattgcatatcaagggatggaaattcactggactctaacgtcacaggagacaatcctctc 39642125  T

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Target: scaffold0035 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 73885 - 73931
Alignment:
Q  42 ttttcactggactctctcctgttttaatctccacccttaaatgcatc 88  Q
    |||||| |||||||||||| ||||||||| |||||||||||| ||||    
T  73885 ttttcattggactctctccagttttaatccccacccttaaatacatc 73931  T

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