View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_23 (Length: 382)
Name: NF20885_low_23
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 185 - 372
Target Start/End: Complemental strand, 29856527 - 29856340
Alignment:
| Q |
185 |
ggaagttgaattagtagtattttactatttttgtgtggagcgaataactaatcttattttggttcatttttgtgtgtaggaaggtgaatttttctccaag |
284 |
Q |
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| T |
29856527 |
ggaagttgaattagtagtattttactatttttgtgtggagcgaataactaatcttattttggttcatttttgtgtgtaggaaggtgaatttttctccaag |
29856428 |
T |
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| Q |
285 |
aatggatttccaaagtcaccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagagagggctctctg |
372 |
Q |
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| T |
29856427 |
aatggatttccaaagtcaccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagagagggctctctg |
29856340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 29856696 - 29856583
Alignment:
| Q |
17 |
aaagagttgaaccatgattcataggtcttgcaaatttgatgtttggttcggttttgaaacc-nnnnnnngggtcttatcggatgtttctctttattcttc |
115 |
Q |
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| T |
29856696 |
aaagagttgaaccatgattcataggtcttgcaaatttgatgtttggttcggttttgaaaccttttttttgggtctcatcggatgtttctctttattcttc |
29856597 |
T |
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| Q |
116 |
caatacataaaata |
129 |
Q |
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| T |
29856596 |
caatacataaaata |
29856583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 372
Target Start/End: Original strand, 17408923 - 17408992
Alignment:
| Q |
303 |
ccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagagagggctctctg |
372 |
Q |
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| T |
17408923 |
ccatttccaaatggatggaaaggaaatgctggtctatatgctgttggatttacaaggagaggactctctg |
17408992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 372
Target Start/End: Complemental strand, 39732560 - 39732450
Alignment:
| Q |
262 |
aggaaggtgaatttttctccaagaatggatttccaaagtcaccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagag |
361 |
Q |
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| T |
39732560 |
aggaaggtgaatttttctcaaaaaatggatacccaaagatgccatttccacatggttggaagggaaattcaggactttatgctgtagggttcacaaagag |
39732461 |
T |
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| Q |
362 |
agggctctctg |
372 |
Q |
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| T |
39732460 |
agggctttctg |
39732450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 372
Target Start/End: Original strand, 39840401 - 39840511
Alignment:
| Q |
262 |
aggaaggtgaatttttctccaagaatggatttccaaagtcaccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagag |
361 |
Q |
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| T |
39840401 |
aggaaggtgaatttttctcaaaaaatggatacccaaagatgccatttccacatggttggaagggaaattcaggactttatgctgtagggttcacaaagag |
39840500 |
T |
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| Q |
362 |
agggctctctg |
372 |
Q |
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|||||| |||| |
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| T |
39840501 |
agggctttctg |
39840511 |
T |
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