View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_low_26 (Length: 365)
Name: NF20885_low_26
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 6863690 - 6863928
Alignment:
| Q |
21 |
atgaaagggaaactataattcattgaagaataataatctgaaaattaaggaatgattaaacaagtgatgatacactatttcctctcnnnnnnnnnnnnnn |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6863690 |
atgaaagggaaactataattcattgaagaatcataatctgaaaattaaggaatgattaaacaagtgatgatacactatttcctctcaaaaagataaaaat |
6863789 |
T |
|
| Q |
121 |
nnngtgatgatcaactatttatacaagaatatgatcatattattaggtctgcaaaattggaaataaactaaaaagcagaaaaacaaggagaggtctcaac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
6863790 |
aaagtgatgatcaactatttatacaagaatatgatcat--tattaggtctgcaaaattgcaaataaaccaaaaagcagaaaaacaaggagagatctcaac |
6863887 |
T |
|
| Q |
221 |
gaggaacacaagccataaagcttgcaacttcaaaaaatgat |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6863888 |
gaggaacacaagccataaagcttgcaacttcaaaaaatgat |
6863928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University