View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_27 (Length: 363)
Name: NF20885_low_27
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_27 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 25642360 - 25642697
Alignment:
| Q |
13 |
aatataatctttttattcttgttttatggtataaattacaaagatctattcaagaacaaacaa--ttttaatttcacactcaaaatgattttagttgttg |
110 |
Q |
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| T |
25642360 |
aatataatctttttattcttgttttatggtataaattacaaagatctattcaagaacaaacaaaattttaatttcacactcaaaatgattttagttgttg |
25642459 |
T |
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| Q |
111 |
aacggttctgatatcgcatgagcctcagtggattcgatattttatttttgataaaccagcttacttactattgtatatcaagataggtagaatcctcttt |
210 |
Q |
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| T |
25642460 |
aacggttctgatatcgcatgagcctcagtggattcgatattttatttttgataaaccagcttacttactattgtatatcaggataggtagaatcctcttt |
25642559 |
T |
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| Q |
211 |
attaggcattaagagctgtggttgagatcacaaagatccgtcaatggctacacacacaaatgaaattccttgcgtatctttctattcttgatggaaagaa |
310 |
Q |
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| T |
25642560 |
attaggcattaagagctctggttgagatcacaaagatccgtcaatggctacacacacaaatgaaattccttgcatatctttctattcttgatggaaagaa |
25642659 |
T |
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| Q |
311 |
ttacgacaattggtgcaaacaaattaaggtggtgtttg |
348 |
Q |
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| T |
25642660 |
ttacgacaattggtgcaaacaaatgaaggtggtgtttg |
25642697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 18997792 - 18997904
Alignment:
| Q |
60 |
attcaagaacaaacaa--ttttaatttcacactcaaaatgattttagttgttgaacggttctgat-atcgcatgagcctcagtggattcgatatttta-t |
155 |
Q |
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| T |
18997792 |
attcatgaacaaacaaacttttaatttcatactcaaaatgatgttagttgttgaaggaatatgataagctcatgagttttagtggattcgatattttatt |
18997891 |
T |
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| Q |
156 |
ttttgataaacca |
168 |
Q |
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| T |
18997892 |
ttttgataaacca |
18997904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 23267 - 23182
Alignment:
| Q |
93 |
aaatgattttagttgttgaacggttctgatatcgcatgagcctcagtggattcgatattttatttttgataaaccagcttacttac |
178 |
Q |
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|||| |||||||||||||||||| ||||||||| || ||| ||| ||| |||| ||||||||| ||||||||||| |||||||||| |
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| T |
23267 |
aaataattttagttgttgaacggatctgatatcacacgagtctctgtgaattccatattttatctttgataaaccggcttacttac |
23182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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