View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_29 (Length: 353)
Name: NF20885_low_29
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 51008900 - 51009231
Alignment:
| Q |
7 |
gtgagatgaacaatttcatcatgcaaaacattactgaaagattaagacctcttgttggtttgaatggctgggattactgtgtctactggaaattaagtga |
106 |
Q |
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| T |
51008900 |
gtgacatgaacaatttcatcatgcaaaacattactgaaagattaagacctcttgttggtttgaatggctgggattactgtgtctactggaaattaagtga |
51008999 |
T |
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| Q |
107 |
agatcaaaggttataacttatatacataacattacattaattgtgatgctaatttgtcaaattaattgtgatgctaatttgttgatttatatgtaggtat |
206 |
Q |
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| T |
51009000 |
agatcaaaggttataacttatatacattacattacattaattgtgatgctaatttgtcaaattaattgtgatgctaatttgttgatttatatgtaggtat |
51009099 |
T |
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| Q |
207 |
cttgaatggttgggatgttgttgtggtgggagtgaaagcaaccaaaatggtggagaagaacatcttttccctgtctcttcatgtagggatacaatgtttt |
306 |
Q |
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| T |
51009100 |
cttgaatggttgggatgttgttgtggtgggagtgaaagcaaccaaaatggtggagaagaacatcttttccctgtctcttcatgtagggatacaatgtttt |
51009199 |
T |
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| Q |
307 |
cacacccaagaacaaactcttgtgatcttctt |
338 |
Q |
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| T |
51009200 |
cacacccaagaacaaactcttgtgatcttctt |
51009231 |
T |
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