View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_3 (Length: 843)
Name: NF20885_low_3
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 19 - 825
Target Start/End: Original strand, 43409798 - 43410594
Alignment:
| Q |
19 |
tgtggtcgccggtcgtcttcttcttcgagcgggagaaagtccggggacaagcgaagaaccaaggcggagaagactataagcttgccggttctgagacaat |
118 |
Q |
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| T |
43409798 |
tgtggtcgccggtcgtcttcttcttcgagtgggagaaagtccggggacaagcgaagaaccaaggcggagaagactataagcttgccggttctgagacaat |
43409897 |
T |
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| Q |
119 |
actttgccggaagcctaaaggacgctgcaaagagcatcggtggtaagtgacttgtaaaattcaatttcagttttaattaattaattaa----ataaaact |
214 |
Q |
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| T |
43409898 |
actttgccggaagcctaaaggacgccgcaaagagcatcggtggtaagtgacttgtaaaattcaatttcagttttaattaattaattaattaaataaaact |
43409997 |
T |
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| Q |
215 |
atgtcatggatattattatccaacaactcgatctcaatcacaatctgaaagtaattaaatatataataattgtgtgatacagtgtgtcctacaactctga |
314 |
Q |
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| T |
43409998 |
atgtcatggatattattatccaacaactcgatctcaatcacaatctgaa-gtaattaaata----ataattttgtgatacagtgtgtcctacaactctga |
43410092 |
T |
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| Q |
315 |
aaaggatatgcagacagcatgggattacaagatggccttcaagaaaaataaagaaggtgggccactctttaaagaagctacaacttgtgatttattctgt |
414 |
Q |
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| T |
43410093 |
aaaggatatgcagacagcatgggattacaagatggccttcaagaaaaataaagaaggtgggccactctttaaagaagctacaacttgtgattgattctgt |
43410192 |
T |
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| Q |
415 |
tcaaggtgcagagggtgccatacagattggctctttctatgccagcttcccagagttgagcactgcaactgctaatggtggtgatggtaatgataacaac |
514 |
Q |
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| T |
43410193 |
tcaaggtgcagagggtgccatacagattggctctttctatgccagcttcccagagttgagcaatgcaactgctaatggtggtgatggtaatgat---aac |
43410289 |
T |
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| Q |
515 |
aacaacaatagcttatataataataaccatggagatggaatagttactagtttgaaatccccaccctctgcttgcagtcagacccatgcaggaaacaaat |
614 |
Q |
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| T |
43410290 |
agcaacaatagcttctataataataaccatggagatggaatagttactagtttgaaatccccaccctctgcttgcagtcagacccatgcaggaaacaaat |
43410389 |
T |
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| Q |
615 |
tacctatgactactactactgccattaaccatcatcatgttgtgatgacagaaaaccctacaggagctcctttaggagttgatcatgccttcatgcatgc |
714 |
Q |
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| T |
43410390 |
tacctatgactactactactgccattaaccatcatcatgttgtgatgacagaaaaccctacaggagctcctttaggagttgatcatgccttcatgcatgc |
43410489 |
T |
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| Q |
715 |
atctaatattaatatccaggactaccatcagcagctgcaggaggatcttgatactaagcaattactgctacatttcaacaacaacaataatcaaatccta |
814 |
Q |
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| T |
43410490 |
atctaatattaatatccaggactaccat---cagctgcaggaggatcttgatactaagcaattactgctacattt---caacaacaataatcaaatccta |
43410583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 25531358 - 25531416
Alignment:
| Q |
293 |
acagtgtgtcctacaactctgaaaaggatatgcagacagcatgggattacaagatggcc |
351 |
Q |
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| T |
25531358 |
acagtttgtccaacaactctgaagagaatatgcagacaacatggaatttcaagatggcc |
25531416 |
T |
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