View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_low_31 (Length: 339)

Name: NF20885_low_31
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_low_31
NF20885_low_31
[»] chr1 (3 HSPs)
chr1 (255-322)||(52140816-52140883)
chr1 (92-153)||(6923510-6923571)
chr1 (206-249)||(52140901-52140944)
[»] chr8 (3 HSPs)
chr8 (150-274)||(17524437-17524571)
chr8 (278-322)||(17524854-17524898)
chr8 (115-152)||(16367881-16367918)
[»] chr4 (2 HSPs)
chr4 (17-136)||(37615638-37615760)
chr4 (115-151)||(17558824-17558860)
[»] chr6 (1 HSPs)
chr6 (17-75)||(22083675-22083733)
[»] chr3 (2 HSPs)
chr3 (114-155)||(52130754-52130795)
chr3 (115-151)||(5561552-5561588)
[»] chr7 (1 HSPs)
chr7 (114-150)||(24763319-24763355)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 52140883 - 52140816
Alignment:
Q  255 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatac 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140883 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatac 52140816  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 6923510 - 6923571
Alignment:
Q  92 ttcaactaatatttttagcaaattatgacccatgcggcagcacgggtagacaatctagttta 153  Q
    ||||||||||||||||||| |  |||||||| ||| || |||||||||||| ||||||||||    
T  6923510 ttcaactaatatttttagctatatatgacccgtgctgctgcacgggtagacgatctagttta 6923571  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 52140944 - 52140901
Alignment:
Q  206 gttggccaattgcagaggaggataagagaactcaaaatcaagct 249  Q
    ||||||||||||||||||||  |||||||||||||||| |||||    
T  52140944 gttggccaattgcagaggagattaagagaactcaaaattaagct 52140901  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 150 - 274
Target Start/End: Original strand, 17524437 - 17524571
Alignment:
Q  150 tttaacaaatttgtgtgaaccatcgcggtattctaccaagtttctcttgctcaaatg-ttggccaattgcagaggaggataagagaactcaaaatcaag- 247  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||  |||||||||||||||| |||     
T  17524437 tttaagaaatttgtgtgaaacatcgcggtactctaccaagtttctcttgctccaatgtttggccaattgcagaggagattaagagaactcaaaattaagc 17524536  T
Q  248 --------ctcgtaagtggcaactgtttgtacata 274  Q
            |||||||||||||||||||||||||||    
T  17524537 tttaattactcgtaagtggcaactgtttgtacata 17524571  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 17524854 - 17524898
Alignment:
Q  278 acatcgaattaaattagcaataccgtggccactggtacttcatac 322  Q
    ||||||||||||||||||||||||||||||| | | |||||||||    
T  17524854 acatcgaattaaattagcaataccgtggccagtaggacttcatac 17524898  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 16367881 - 16367918
Alignment:
Q  115 tatgacccatgcggcagcacgggtagacaatctagttt 152  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  16367881 tatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 37615760 - 37615638
Alignment:
Q  17 aattaatcgcatttagtcagaacaatttggtacattgagtaactatatattaattttatcggatatat---gattgctttcaactaatatttttagcaaa 113  Q
    |||||||||||||  ||||||||||||  ||| |||||||||||||||||||||||||| ||||||||    || |||||||||||||| |||||| |||    
T  37615760 aattaatcgcattacgtcagaacaattcagtatattgagtaactatatattaattttattggatatataacaatggctttcaactaatagttttagtaaa 37615661  T
Q  114 ttatgacccatgcggcagcacgg 136  Q
    ||||||||| ||| |||||||||    
T  37615660 ttatgacccgtgcagcagcacgg 37615638  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 17558860 - 17558824
Alignment:
Q  115 tatgacccatgcggcagcacgggtagacaatctagtt 151  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  17558860 tatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 22083675 - 22083733
Alignment:
Q  17 aattaatcgcatttagtcagaacaatttggtacattgagtaactatatattaattttat 75  Q
    |||||||||||||  ||||||||||||  ||||||||||||||||||| ||||||||||    
T  22083675 aattaatcgcattacgtcagaacaattcagtacattgagtaactatatcttaattttat 22083733  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 52130754 - 52130795
Alignment:
Q  114 ttatgacccatgcggcagcacgggtagacaatctagtttaac 155  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  52130754 ttatgacccgtgcggcagcacgggtagacaatctagtctaac 52130795  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 5561588 - 5561552
Alignment:
Q  115 tatgacccatgcggcagcacgggtagacaatctagtt 151  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5561588 tatgacccgtgcggcagcacgggtagacgatctagtt 5561552  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 24763319 - 24763355
Alignment:
Q  114 ttatgacccatgcggcagcacgggtagacaatctagt 150  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24763319 ttatgacccgtgcggcagcacgggtagacaatctagt 24763355  T

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