View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_low_34 (Length: 321)
Name: NF20885_low_34
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_34 |
 | |
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| [»] scaffold0047 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 348839 - 348561
Alignment:
| Q |
12 |
agagatattttaagggatagacaaaactcacctcttaagtaccccttcagatcttcctcactttctgaatatgagcaatcattgttttgcttcctaacat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| ||| |||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||| |
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|
| T |
348839 |
agagatattttaagggatagacaaaactcgccccttttgtagtccttcaaatcttcctcactttatgaatatgagcaaccattgttttgctttctaacac |
348740 |
T |
|
| Q |
112 |
gaaaaaatttagtttacgtaagttcactacaaagaacaaataaatatggtggtgaaaaatgtagaaaatgtaccacttatcttgttgacattgctgcaca |
211 |
Q |
| |
|
|| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
348739 |
-------------tt---taagtttactacaaagaccaaataaatatggtggtgaaaaatgtagaaaatgtaccacttatcttgttgacattgctgcaga |
348656 |
T |
|
| Q |
212 |
acttgaatatgcaagatatgatcttagattaatgtgaatgaaagtgtcaagtggaggaaagagatgaaaatatatgtgtgtgttaagttgtggtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||| || || || |||||||||||||| || || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
348655 |
acttgaatatgcaagatatgatcttaaatcaacgtaaatgaaagtgtcaaatgaagaaaagagataaaaatatatgtgtgtgttaagttgtggtt |
348561 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 22433298 - 22433229
Alignment:
| Q |
215 |
tgaatatgcaagatatgatcttagattaatgtgaatgaaagtgtcaagtggaggaaagagatgaaaatat |
284 |
Q |
| |
|
||||||||||||||||||||| | | | ||||| |||| |||||||||||| || ||||||||||||| |
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|
| T |
22433298 |
tgaatatgcaagatatgatctcaagtcagtgtgagtgaacatgtcaagtggagtaaggagatgaaaatat |
22433229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 88 - 288
Target Start/End: Original strand, 25124 - 25324
Alignment:
| Q |
88 |
aatcattgttttgcttcctaacatgaaaaaatttagtttacgtaagttcactacaaagaacaaataaatatggtggtgaaaaatgtagaaaatgtaccac |
187 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||| |||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||| | ||| |
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|
| T |
25124 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac |
25223 |
T |
|
| Q |
188 |
ttatcttgttgacattgctgcacaacttgaatatgcaagatatgatcttagattaatgtgaatgaaagtgtcaagtggaggaaagagatgaaaatatatg |
287 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25224 |
ttatcttattgacattgctgcacaacttgaatatataagatatgatcttagatcaatgtgaatgaaagtgtcaagtggaggaaagagatgaaaatatatg |
25323 |
T |
|
| Q |
288 |
t |
288 |
Q |
| |
|
| |
|
|
| T |
25324 |
t |
25324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 88 - 288
Target Start/End: Complemental strand, 11396 - 11196
Alignment:
| Q |
88 |
aatcattgttttgcttcctaacatgaaaaaatttagtttacgtaagttcactacaaagaacaaataaatatggtggtgaaaaatgtagaaaatgtaccac |
187 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||| |||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||| | ||| |
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|
| T |
11396 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac |
11297 |
T |
|
| Q |
188 |
ttatcttgttgacattgctgcacaacttgaatatgcaagatatgatcttagattaatgtgaatgaaagtgtcaagtggaggaaagagatgaaaatatatg |
287 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11296 |
ttatcttattgacattgctgcacaacttgaatatataagatatgatcttagatcaatgtgaatgaaagtgtcaagtggaggaaagagatgaaaatatatg |
11197 |
T |
|
| Q |
288 |
t |
288 |
Q |
| |
|
| |
|
|
| T |
11196 |
t |
11196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 88 - 288
Target Start/End: Original strand, 14828313 - 14828513
Alignment:
| Q |
88 |
aatcattgttttgcttcctaacatgaaaaaatttagtttacgtaagttcactacaaagaacaaataaatatggtggtgaaaaatgtagaaaatgtaccac |
187 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||| |||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
14828313 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac |
14828412 |
T |
|
| Q |
188 |
ttatcttgttgacattgctgcacaacttgaatatgcaagatatgatcttagattaatgtgaatgaaagtgtcaagtggaggaaagagatgaaaatatatg |
287 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14828413 |
ttatcttattgacattgctgcacaacttgaatatataagatatgatcttagatcaatgtgaatgaaagtgtcaagtggaggaaagagatgaaaatatatg |
14828512 |
T |
|
| Q |
288 |
t |
288 |
Q |
| |
|
| |
|
|
| T |
14828513 |
t |
14828513 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 306
Target Start/End: Complemental strand, 42125553 - 42125343
Alignment:
| Q |
85 |
agcaatcattgttttgcttcctaacatgaaaaaatttagtttacgtaagttcactacaaagaacaaataaatatggtggtgaaaaatgtagaaaatgtac |
184 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| ||| ||||||| ||||||||||| |||| | || ||||||||||||| | ||| |
|
|
| T |
42125553 |
agcaatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaagaa--------tatgttagtaaaaaatgtagaaattatac |
42125463 |
T |
|
| Q |
185 |
cacttatcttgttgacattgctgcacaacttgaatatgcaagatatgatcttagattaatgtgaatgaaagtgtcaagtggaggaaagagatgaaaatat |
284 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| |||||| |||| |||| | ||||||||||| |||||| || || |||||||||||| || |
|
|
| T |
42125462 |
cacttatcttgttgacattgctgtactacttgaatatgctagatataatctcagatcagtgtgaatgaaactgtcaaatgaagaaaagagatgaaa--at |
42125365 |
T |
|
| Q |
285 |
atgtgtgtgttaagttgtggtt |
306 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42125364 |
atgtgtgtgttaagttgtggtt |
42125343 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 39070834 - 39070944
Alignment:
| Q |
12 |
agagatattttaagggatagacaaaactcacctcttaagtaccccttcagatcttcctcactttctgaatatgagcaatcattgttttgcttcctaacat |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39070834 |
agagatatttgaagggatagacaaaactcacttcttaagcaccccttcaaatcttcctcactttatgaatatgagcaatcattgttttgcttcctaacac |
39070933 |
T |
|
| Q |
112 |
gaaaaaattta |
122 |
Q |
| |
|
||| ||||||| |
|
|
| T |
39070934 |
gaagaaattta |
39070944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 43505127 - 43505237
Alignment:
| Q |
12 |
agagatattttaagggatagacaaaactcacctcttaagtaccccttcagatcttcctcactttctgaatatgagcaatcattgttttgcttcctaacat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
43505127 |
agagatattttaagggatagacaaaactcacctcttaagcaccccttcaaatcttccttactttatgaatatgagcaatcgttgttttgcttcctaacac |
43505226 |
T |
|
| Q |
112 |
gaaaaaattta |
122 |
Q |
| |
|
||| ||||||| |
|
|
| T |
43505227 |
gaagaaattta |
43505237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 20352649 - 20352821
Alignment:
| Q |
87 |
caatcattgttttgcttcctaacatgaaaaaatttagtttacgtaagttcactacaaagaacaaataaatatggtggtgaaaaa----tgtagaaaatgt |
182 |
Q |
| |
|
||||||| || ||||||||||||| || ||||||| || |||||| || |||||||||||||||| ||| | ||| ||| | |||||||||| |
|
|
| T |
20352649 |
caatcatggtcttgcttcctaacaataacaaatttaattacaataagtttacaacaaagaacaaataaacatgcagttgataaaaaagtatagaaaatgt |
20352748 |
T |
|
| Q |
183 |
accacttatcttgttgacattgctgcacaacttgaatatgcaagatatgatcttagattaatgtgaatgaaag |
255 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||||||| ||||||||| | |||| ||||| |||||| |
|
|
| T |
20352749 |
tccacttatcttgttgacattgccgcataacttaaatatgcaatatatgatctcaaattagtgtgagtgaaag |
20352821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 30087623 - 30087836
Alignment:
| Q |
12 |
agagatattttaagggatagacaaaactcacctcttaagtaccccttcagatcttcctcactttctgaatatgagcaatcattgttttgcttcctaacat |
111 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||||||| | ||| || | ||| || ||||| |||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
30087623 |
agagttattttaagggatagacaaaacccaactcttaaattttcct-caaaactttcttactttttgaacatgagaaatcatggttttgcttcctaacat |
30087721 |
T |
|
| Q |
112 |
gaaaaaatttagtttacgtaagttcactacaaagaacaaataaatatg---gtggtgaaaaa----tgtagaaaatgtaccacttatcttgttgacattg |
204 |
Q |
| |
|
|| ||||||| || || || |||||||||| ||||||| ||| ||||| ||||| | |||||||||| ||||||||||||||||||||| |
|
|
| T |
30087722 |
taacaaatttaattacaatatattttctacaaagaagaaataaacatgcaggtggtaaaaaaaaagtatagaaaatgttccacttatcttgttgacattg |
30087821 |
T |
|
| Q |
205 |
ctgcacaacttgaat |
219 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
30087822 |
ccgcataacttgaat |
30087836 |
T |
|
Back To:
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