View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_low_36 (Length: 312)

Name: NF20885_low_36
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_low_36
NF20885_low_36
[»] chr7 (4 HSPs)
chr7 (256-296)||(32548228-32548268)
chr7 (77-107)||(32548417-32548447)
chr7 (20-50)||(32548522-32548552)
chr7 (255-296)||(35770741-35770782)
[»] chr5 (3 HSPs)
chr5 (255-296)||(32944041-32944082)
chr5 (77-107)||(32944230-32944260)
chr5 (20-50)||(32944335-32944365)
[»] chr4 (3 HSPs)
chr4 (255-296)||(33370432-33370473)
chr4 (77-107)||(33370621-33370651)
chr4 (20-50)||(33370726-33370756)
[»] chr3 (1 HSPs)
chr3 (255-296)||(49288207-49288248)


Alignment Details
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 32548268 - 32548228
Alignment:
Q  256 acttgaatctcacaataaaagaaggtaaaacaaggtaattt 296  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32548268 acttgaatctcacaataaaagaaggtaaaacaaggtaattt 32548228  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 32548447 - 32548417
Alignment:
Q  77 caccctaattgacagatgaaaaataccaaac 107  Q
    |||||||||||||||||||||||||||||||    
T  32548447 caccctaattgacagatgaaaaataccaaac 32548417  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 32548552 - 32548522
Alignment:
Q  20 aaatggttgtcccaactctccttcccttcac 50  Q
    |||||||||||||||||||||||||||||||    
T  32548552 aaatggttgtcccaactctccttcccttcac 32548522  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 35770741 - 35770782
Alignment:
Q  255 cacttgaatctcacaataaaagaaggtaaaacaaggtaattt 296  Q
    |||||||||||||| |||| ||||||||||| ||||||||||    
T  35770741 cacttgaatctcacgataatagaaggtaaaataaggtaattt 35770782  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 32944082 - 32944041
Alignment:
Q  255 cacttgaatctcacaataaaagaaggtaaaacaaggtaattt 296  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  32944082 cacttgaatctcacaataaaagaaggtaaaataaggtaattt 32944041  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 32944260 - 32944230
Alignment:
Q  77 caccctaattgacagatgaaaaataccaaac 107  Q
    |||||||||||||||||||||||||||||||    
T  32944260 caccctaattgacagatgaaaaataccaaac 32944230  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 32944365 - 32944335
Alignment:
Q  20 aaatggttgtcccaactctccttcccttcac 50  Q
    |||||||||||||||||||||||||||||||    
T  32944365 aaatggttgtcccaactctccttcccttcac 32944335  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 33370473 - 33370432
Alignment:
Q  255 cacttgaatctcacaataaaagaaggtaaaacaaggtaattt 296  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  33370473 cacttgaatctcacaataaaagaaggtaaaataaggtaattt 33370432  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 33370651 - 33370621
Alignment:
Q  77 caccctaattgacagatgaaaaataccaaac 107  Q
    |||||||||||||||||||||||||||||||    
T  33370651 caccctaattgacagatgaaaaataccaaac 33370621  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 33370756 - 33370726
Alignment:
Q  20 aaatggttgtcccaactctccttcccttcac 50  Q
    |||||||||||||||||||||||||||||||    
T  33370756 aaatggttgtcccaactctccttcccttcac 33370726  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 49288248 - 49288207
Alignment:
Q  255 cacttgaatctcacaataaaagaaggtaaaacaaggtaattt 296  Q
    |||||||||||||| |||| ||||||||||| ||||||||||    
T  49288248 cacttgaatctcacgataatagaaggtaaaataaggtaattt 49288207  T

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