View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_37 (Length: 306)
Name: NF20885_low_37
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 51185798 - 51185496
Alignment:
| Q |
1 |
aaatcacaacagatgagatttggatatagtcatagccaatagttacatagtaacgtggcactataataacgtaggagatccaaccaagacatgtttggtc |
100 |
Q |
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| T |
51185798 |
aaatcacaacagatgagatttggatatagtcatagccaatagtcacatagtaacgtggcactataataacgtaggagatccaaccaagacatgtttggtc |
51185699 |
T |
|
| Q |
101 |
ggtgtgtaactaactaactaactgcagcagcattaacgtaggaggaaacaaagacac------------aagtgtatcattcatttgcataacaatgatc |
188 |
Q |
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| T |
51185698 |
ggtgtgtaactaact----aactgcagcagcattaacgtaggaggaaacaaagaaacagacaaaggtagaagcgtatcattcatttgcataacaatgatc |
51185603 |
T |
|
| Q |
189 |
tcatccttaatgctaccatctgctacaacattaagaccttgttgtagttgtagcatcactc---catcatcatcatcatcttcacgaagaattgctctct |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51185602 |
tcatccttaatgctaccatctgctacaacattaagaccttgttgtagttgtagcatcactccatcatcatcatcatcatcttcacgaagaattgctctct |
51185503 |
T |
|
| Q |
286 |
ttcatct |
292 |
Q |
| |
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||||||| |
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| T |
51185502 |
ttcatct |
51185496 |
T |
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