View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_38 (Length: 304)
Name: NF20885_low_38
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 13658745 - 13659029
Alignment:
| Q |
1 |
tggagagtgtggtttgtggtgtgcctatgatttgttggccgtattttgctgatcaacaaattaatagtaggtttgtgagtgaggtttggagaattgggtt |
100 |
Q |
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| T |
13658745 |
tggagagtgtggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagtaggtttgtgagtgatgtttggaaacttgggtt |
13658844 |
T |
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| Q |
101 |
ggatatgaaggatgtttgtgataggaaggttgtggagaatatggtgaatgatgttatggtgaataggaatgatgagtttgtaaaatcatcatttgatatg |
200 |
Q |
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| T |
13658845 |
ggatatgaaagatgtttgtgataggaaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatata |
13658944 |
T |
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| Q |
201 |
gctaagttggcatccaagagtgtgagtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctacta |
285 |
Q |
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| T |
13658945 |
gctaagttggcatccaagagtgtgagtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctacta |
13659029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 13648217 - 13648501
Alignment:
| Q |
1 |
tggagagtgtggtttgtggtgtgcctatgatttgttggccgtattttgctgatcaacaaattaatagtaggtttgtgagtgaggtttggagaattgggtt |
100 |
Q |
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| T |
13648217 |
tggaaagtgtggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagtaggtttgtgagtgatgtttggaaacttgggtt |
13648316 |
T |
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| Q |
101 |
ggatatgaaggatgtttgtgataggaaggttgtggagaatatggtgaatgatgttatggtgaataggaatgatgagtttgtaaaatcatcatttgatatg |
200 |
Q |
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| T |
13648317 |
ggatatgaaagatgtttgtgataggaaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatata |
13648416 |
T |
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| Q |
201 |
gctaagttggcatccaagagtgtgagtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctacta |
285 |
Q |
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| T |
13648417 |
gctaagttggcatccaagagtgtgagtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctacta |
13648501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 13653272 - 13653556
Alignment:
| Q |
1 |
tggagagtgtggtttgtggtgtgcctatgatttgttggccgtattttgctgatcaacaaattaatagtaggtttgtgagtgaggtttggagaattgggtt |
100 |
Q |
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| T |
13653272 |
tggagagtgtggtttgtggtgtgcctatgatttgttggccttatttttctgatcaaccgcttaatagtaggtttgtgagtgaggtttggaagcttggatt |
13653371 |
T |
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| Q |
101 |
ggatatgaaggatgtttgtgataggaaggttgtggagaatatggtgaatgatgttatggtgaataggaatgatgagtttgtaaaatcatcatttgatatg |
200 |
Q |
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| T |
13653372 |
ggatatgaaagatgtttgtgataggaatgttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaatctgctactaaaatg |
13653471 |
T |
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| Q |
201 |
gctaagttggcatccaagagtgtgagtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctacta |
285 |
Q |
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| T |
13653472 |
gcggatttggcttccaagagtgtaaatcctgatggttcctcctacaacaacctccaagatttgattcagtatataaggtctacta |
13653556 |
T |
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