View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_low_4 (Length: 753)
Name: NF20885_low_4
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 734
Target Start/End: Complemental strand, 5171437 - 5170729
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5171437 |
atcattcagaagggaatgatgcagttgaggagggcaaacaatccaagactttagagtatccgaagaagaagcaccatgcttagcaagccaatccgcacac |
5171338 |
T |
|
| Q |
118 |
tcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5171337 |
tcgttgccttgacggagggtataatgaaaattaacaattcaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
5171238 |
T |
|
| Q |
218 |
ggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaaat |
317 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
5171237 |
ggacatccgacatgattaaatcaagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacaaaggccatgaaaaat |
5171138 |
T |
|
| Q |
318 |
ggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaacct |
417 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5171137 |
ggcatacaattcggccgccaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtcactaataagacctccaaaacct |
5171038 |
T |
|
| Q |
418 |
aatcttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctgtataatgggcttctgaatgg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5171037 |
gatcttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacttgtataataggcttctgaatgg |
5170938 |
T |
|
| Q |
518 |
catatgattagcacatgagcacttgattagcaattcttctaacatatgaaaaatataaataatgaaagtaatcgaatataccttaatttgcaatcctcta |
617 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5170937 |
catatgattagcaca--------tgattagcaattcttctaacatatgaaaaatataaataatgaaagtaatcggatatagcttaatttgcaatcctcta |
5170846 |
T |
|
| Q |
618 |
tgatgattctcatgtaggaaggtaaattatcacgtattttgatatacatttgcaaaatttaaataaacatcaccattctatttcgaaccaacgatcaagg |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5170845 |
tgatgattctcatgtaggaaggtaaattatcacgtattttgatattcatttgcaaaatttaaataaacatcaccattctatttcgaatcaacgatcaagg |
5170746 |
T |
|
| Q |
718 |
gtgtgacgactatgtga |
734 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5170745 |
atgtgacgactatgtga |
5170729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 83 - 451
Target Start/End: Complemental strand, 6771130 - 6770757
Alignment:
| Q |
83 |
aagaagcaccatgcttagcaagccaattcgcacactcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaat |
182 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| ||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
6771130 |
aagaagcatcatgcttagcaagccaatccgcacactcgttaccttgacggagggcatgctgaaaatgaacaattcaatctcgatgttgcagttggacaat |
6771031 |
T |
|
| Q |
183 |
ctgactaatcagaggagcatgaggatgatgagattggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtag |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||| ||| ||| |||||||||||||| ||| |
|
|
| T |
6771030 |
ctgactaatcagaggagcatgaggatgatgagattcgacattcgacatgattaaatcaagagccatcctataatttgattcaagaataatgttcatgtga |
6770931 |
T |
|
| Q |
283 |
cccgcatcatacgcaatacgaagaccatgaaaaatggcatacaattcggccgtcaagtaagaagtaataccacaaaatccag-----aaaaatccagcaa |
377 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
6770930 |
cccgcatcatacgcaatatgaagaccataaaaaatggcatacaattcggccgccaagcaagaagtaataccacaaaatctagaagaaaaaaacccagcaa |
6770831 |
T |
|
| Q |
378 |
ccaatcaccattattgtttctaataagacctccaaaacctaatcttccaggattagaaagagaactaccgtcaa |
451 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||| ||| ||| ||||||| |||||||||||| |
|
|
| T |
6770830 |
ccaatcaccattattgtttcttataagacctccaaaacctgatctcccatgatcagaaagataactaccgtcaa |
6770757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 33931372 - 33931707
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||| ||| ||| ||||| |||||||||| |||| |||||||||| || ||| || |||| ||||||| |
|
|
| T |
33931372 |
atcatccagaagaaaatgatgcagttgagcaggttaaaaaattcaagactttagagcatccgaaaaagaagcaccttgtgtagtaattcaatccgcacac |
33931471 |
T |
|
| Q |
118 |
tcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
217 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| || |||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
33931472 |
tcgttgccttgatggagggtatgatgaaaataaaaaatctaatctcgatgttgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggtt |
33931571 |
T |
|
| Q |
218 |
ggacatccaacatgattaaat--tgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaa |
315 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||||| ||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
33931572 |
ggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacgcaatacgaagaccataaaaa |
33931671 |
T |
|
| Q |
316 |
atggcatacaattcggccgtcaagtaagaagtaata |
351 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33931672 |
atggcatacaattcggccgtcaaacaagaagtaata |
33931707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 96 - 235
Target Start/End: Complemental strand, 39989414 - 39989276
Alignment:
| Q |
96 |
cttagcaagccaattcgcacactcgttgccttgacggaggg-tataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcag |
194 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||| |||| ||| ||| ||||| |
|
|
| T |
39989414 |
cttagcaagccaatccgcacactcgttgccttggcggaggggtatgatgaaaattaacaatccaatctcgatgatgcagttagacattctaacttatcag |
39989315 |
T |
|
| Q |
195 |
aggagcatgaggatgatgagattggacatccaacatgatta |
235 |
Q |
| |
|
|| ||||| ||||||||||| || | |||||||||||||| |
|
|
| T |
39989314 |
agaagcataaggatgatgaggtttg--atccaacatgatta |
39989276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 7022997 - 7022499
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7022997 |
atcattcagaaggaaatgatgcagttgaggagggcaaacaatccaatactttagagcatccgaagaagaagcaccatgcttagcaagtcaatccgcacac |
7022898 |
T |
|
| Q |
118 |
tcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7022897 |
tcgttgccttgacggagggtatgatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
7022798 |
T |
|
| Q |
218 |
ggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaaat |
317 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
7022797 |
ggacatccgacatgattaaatcaagagccatcctagaatctgactcaagaataatgttcatgtagcccgcaccatacgcaatacgaaggccatgaaaaat |
7022698 |
T |
|
| Q |
318 |
ggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaacct |
417 |
Q |
| |
|
| ||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7022697 |
gacatacaattcggccgccaagcaagaagtaataccacaaaatccaaaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacct |
7022598 |
T |
|
| Q |
418 |
aatcttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctgtataatgggcttctgaatg |
516 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7022597 |
gatctttcaggattagaaagagaactaccgtcaacattaactttgataatattatccaaatgaggaatccatttaacctgtctaatgggcttctgaatg |
7022499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Original strand, 26292172 - 26292672
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| || |||| |
|
|
| T |
26292172 |
atcatcaagaagggaatgatgcagttgaggagggcaaacaatccaagagtttagagcatccgaagaagaagcattatgcttagcaagccaatccgtacac |
26292271 |
T |
|
| Q |
118 |
tcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
217 |
Q |
| |
|
| |||||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
26292272 |
ttgttgccttgacggagggtctgttgaaaattaacaatccaatatcgatgttgcaattggaaaatccgactaatcagaggagcatgaggatgacgagatt |
26292371 |
T |
|
| Q |
218 |
ggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaaat |
317 |
Q |
| |
|
||||| | ||||| |||||| |||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
26292372 |
ggacactcgacatgtttaaatcaagagccctcctagaatctgattcaagaataatgttcatgtagcctgcatcatacgcaatacgaaggccatgaaaaat |
26292471 |
T |
|
| Q |
318 |
ggcatacaattcggccgtcaagtaagaagtaataccacaaaatcc--agaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaac |
415 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26292472 |
ggcatacaattcggccgccaagcaagaagtaataccacaaaatccataaaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaaa |
26292571 |
T |
|
| Q |
416 |
ctaatcttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctgtataatgggcttctgaat |
515 |
Q |
| |
|
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26292572 |
ctgatcttccatgattagaaagagaaataccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctatttaatgggcttctgaat |
26292671 |
T |
|
| Q |
516 |
g |
516 |
Q |
| |
|
| |
|
|
| T |
26292672 |
g |
26292672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 34252487 - 34252052
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34252487 |
atcattcagaagggaatgatgcagttgaggagggcaaacaatccaagactttagagcatccgaagaagaagcaccatgcttagcaagccaatccgcacac |
34252388 |
T |
|
| Q |
118 |
tcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34252387 |
ccgttgccttgacggagggtatgatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgataagatt |
34252288 |
T |
|
| Q |
218 |
ggacatcc--aacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaa |
315 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
34252287 |
ggacatccgagacatgattaaatcaagagccatcctagaatctcactcaagaataatgttcttgtagcctgcatcatacgtaatacgaaggccatgaaaa |
34252188 |
T |
|
| Q |
316 |
atggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaac |
415 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34252187 |
atggcatacaattcggccgccaagcaagaagtaataccacaaaatacagaaaaatccagcaaccaatcaccattattgtttctaataaaacctccaaaac |
34252088 |
T |
|
| Q |
416 |
ctaatcttccaggattagaaagagaactaccgtcaa |
451 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
34252087 |
ccgatctttcagaattagaaagagaactaccgtcaa |
34252052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 20 - 520
Target Start/End: Complemental strand, 10570823 - 10570324
Alignment:
| Q |
20 |
catccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacactc |
119 |
Q |
| |
|
|||||||||| |||||||| || ||| ||||||||| ||| |||| |||| | ||| ||||||||||||||||||||| |||||||||| |||| | |
|
|
| T |
10570823 |
catccagaagagaatgatgtagttgatgagggcaaaatatctaagactttataacatccgaagaagaagcaccatgcttcgcaagccaatctgcac--tt |
10570726 |
T |
|
| Q |
120 |
gttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattgg |
219 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| || || ||||| ||| |||| |
|
|
| T |
10570725 |
gttgccttaatagagggtagaatgaaaattaacaatccaatctcgatgttgcagttgaactatctgactaataagaggaacacgatgatgacgaggttgg |
10570626 |
T |
|
| Q |
220 |
acatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaa-aatg |
318 |
Q |
| |
|
| |||| |||| |||||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| | |
|
|
| T |
10570625 |
atatccgacataattaaattaagagccatcctagaatctgattcaagaataatgttcacatggcccgcatcatacgcaatacgaagaccatgaaattgtt |
10570526 |
T |
|
| Q |
319 |
gcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaaccta |
418 |
Q |
| |
|
||||||||||| || |||| || || ||||||||||||| | ||||| | ||| |||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
10570525 |
tcatacaattcgaccaccaagcaaaaaataataccacaaaaactagaaagacccaacaaccaatcattgttatggtttctaataagacctccaaaacctt |
10570426 |
T |
|
| Q |
419 |
atcttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctgtataatgggcttctgaatggc |
518 |
Q |
| |
|
|| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||| ||||| || |
|
|
| T |
10570425 |
atattccaggattagaaagagaactatcgctaacattaactttgatgatattattcaaaggaggaatccatttaacatgtctaatggacttatgaattgc |
10570326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 32286194 - 32286092
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |||| |||| |||| ||||||| |
|
|
| T |
32286194 |
atcatccagaagggaatgatgcagttgaggagggcaaacaatccaaaattttagagcatccgaagaagaagcatcattcttaacaagtcaatccgcacac |
32286095 |
T |
|
| Q |
118 |
tcg |
120 |
Q |
| |
|
||| |
|
|
| T |
32286094 |
tcg |
32286092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 15917140 - 15917636
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaa-tccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcaca |
116 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||| || ||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
15917140 |
atcattcagaagggaatgacgcagttgaggagggcaaaaaaatccaagactttagagcatacgaagaagaagcatcatgcttagcaagccaatccgcaca |
15917239 |
T |
|
| Q |
117 |
ctcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagat |
216 |
Q |
| |
|
| |||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
15917240 |
cgcgttaccttgacggagggtatgatgaaaattaacaatgcaatctcgatgttgcagttggacaatctgactaattagaggagcatggggatgatgagat |
15917339 |
T |
|
| Q |
217 |
tggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaaa |
316 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
15917340 |
tggacatccgacatgattaaatcaagagccatcctaaaatctgattcaagaataatgttcttgtgacccgcatcatacgcaatacgaaggccatgaaaaa |
15917439 |
T |
|
| Q |
317 |
tggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaacc |
416 |
Q |
| |
|
|| ||||||||| ||||| |||| ||||||||||||||||||||| | ||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
15917440 |
tgacatacaatttggccgccaagcaagaagtaataccacaaaatctataaaaacccagcaaccaatcaccattactttttcaaataagacctccaaaacc |
15917539 |
T |
|
| Q |
417 |
taatcttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctgtataatgggcttctga |
513 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |
|
|
| T |
15917540 |
tgatctcccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaatgaggaatccatttaacttgtctaatgggcttctga |
15917636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 47 - 327
Target Start/End: Original strand, 8567522 - 8567802
Alignment:
| Q |
47 |
gagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacactcgttgccttgacggagggtataatgaaa |
146 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||||||||||| | | ||||||||| |||| |||||||||||||||| || |||||||| |||||| |
|
|
| T |
8567522 |
gagggcaaaaaatccaagactttagagcatccgaagaagaagcatcgtacttagcaagtcaatctgcacactcgttgccttaacagagggtatgatgaaa |
8567621 |
T |
|
| Q |
147 |
attaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattggacatccaacatgattaaattgagagcc |
246 |
Q |
| |
|
||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| || ||||||| ||||||||| || | |||| |
|
|
| T |
8567622 |
attaataattcaatctcgatgttacagttggacaatctgactaatcaaaggagcatgaagatgatgaggttcgacatccgacatgattagatcaaaagcc |
8567721 |
T |
|
| Q |
247 |
atcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaaatggcatacaat |
327 |
Q |
| |
|
| | |||||||||| |||||||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
8567722 |
accatagaatctgattcaagaataatgttcccttgacccgcatcatacgcaatacgaaggccgtgaaaaatgacatacaat |
8567802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 21 - 509
Target Start/End: Original strand, 19816233 - 19816721
Alignment:
| Q |
21 |
atccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacactcg |
120 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19816233 |
atccagaagggaacgatgcagttgaggagggcaaaaaatccaagactttagatcatccgaagaagaagcaccatgcttagcaagccaatccgcacactcg |
19816332 |
T |
|
| Q |
121 |
ttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattgga |
220 |
Q |
| |
|
|| ||||||||||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
19816333 |
ttaccttgacggagagtatgatgaaaatgaacaatccaatcttgatgttgcagttggacaatctgactaatcaggggagcatgaggatgatgagattcaa |
19816432 |
T |
|
| Q |
221 |
catccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaaatggc |
320 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||| |||||||||||| | | | |||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
19816433 |
catccgacatgattaaatcaagagccatcctagaatctgattcaagaataatgctcatatggcccgcatcatatgcaatacgaaggccatgaaaaatagc |
19816532 |
T |
|
| Q |
321 |
atacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaacctaat |
420 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19816533 |
atacaattcagccgccaagcaagaagtaataccacaaaatccagaaaaaccccggaaccaatcaccattattgtttctaataagacctccaaaacctgat |
19816632 |
T |
|
| Q |
421 |
cttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctgtataatgggctt |
509 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19816633 |
cttccagaattagaaagagaactatcgtcaacattaactttgataatattatccaaaggaggaatccatttaacctgtctaatgggctt |
19816721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 268 - 513
Target Start/End: Complemental strand, 21375052 - 21374806
Alignment:
| Q |
268 |
ataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaaatggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaa |
367 |
Q |
| |
|
|||||||| ||| |||||||| ||| ||||||||||| | |||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
21375052 |
ataatgttcctgtggcccgcattatatgcaatacgaaggcaatgaaaaatggcatacaatttgtccgtcaagaaagaagtaataccacaaaattcagaaa |
21374953 |
T |
|
| Q |
368 |
aatccagcaaccaatcaccattattgtttctaataagacctccaaaacctaatcttcca-ggattagaaagagaactaccgtcaacattaactttgatga |
466 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21374952 |
aacccaacaaccaatcaccgttattgtttctaataaaacctccaaaacctgatcttccattaattagaaagagaactaccgtcaacattaactttgatga |
21374853 |
T |
|
| Q |
467 |
tattatccaaaggaggaatccatttaacctgtataatgggcttctga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
21374852 |
tattatccaaaggaggaatccatttaacttgtgtaatgggcttctga |
21374806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 1804711 - 1804489
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
||||||||||| ||||||||| | |||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
1804711 |
atcatccagaaaggaatgatgtaattgaggaggacaaacaatccaagactttagagtatccgaagaagaagcaccatgcttagcaagtcaatctgcacac |
1804612 |
T |
|
| Q |
118 |
tcgttgccttgacggagg--gtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgaga |
215 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||| |||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
1804611 |
tcgttaccttgacggaggctgtatgatgaaaattaacaatccaatatcgatgttgcaggtggacaatctaactaatcagaagagcatgaagatgatgagc |
1804512 |
T |
|
| Q |
216 |
ttggacatccaacatgattaaat |
238 |
Q |
| |
|
|||||||||| |||| ||||||| |
|
|
| T |
1804511 |
ttggacatccgacataattaaat |
1804489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 21375211 - 21375056
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21375211 |
atcatccagaagggaataatgcagtttaggagggcaaacaatccaagactttagagcattcgaagaagaagcaccatgcttagcaagccaatccgcacac |
21375112 |
T |
|
| Q |
118 |
tcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcag |
173 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
21375111 |
tcgttgccttgatggaaggtatgatgaaaattaacaatctaatctcgatgttgcag |
21375056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 337 - 492
Target Start/End: Original strand, 31619188 - 31619343
Alignment:
| Q |
337 |
aagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaacctaatcttccaggattagaaa |
436 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||| |||| || || ||||||||||||||||||||| ||||||||||||||| | ||||| |||||| ||| |
|
|
| T |
31619188 |
aagtaataagttataccgcaaaaaccagagaaattcaacagccaatcaccattattgtttcttataagacctccaaaatccggtcttcatggattaaaaa |
31619287 |
T |
|
| Q |
437 |
gagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccattta |
492 |
Q |
| |
|
||||||| |||||||||||||||| |||| | ||||||||||| |||| |||||| |
|
|
| T |
31619288 |
tagaactatcgtcaacattaactttaatgaaactatccaaaggaagaattcattta |
31619343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 49399618 - 49399757
Alignment:
| Q |
23 |
ccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacactcgtt |
122 |
Q |
| |
|
|||||||||||||||| | |||||||| |||| | ||||||| ||||||||||||||| ||||| ||||||| ||| |||| |||| |||||||||||| |
|
|
| T |
49399618 |
ccagaagggaatgatgtcgttgaggaggacaaaaactccaagactttagagcattcgaaaaagaaacaccatgtttatcaagtcaatccgcacactcgtt |
49399717 |
T |
|
| Q |
123 |
gccttgacggagggtataatgaaaattaacaatccaatct |
162 |
Q |
| |
|
| |||| ||| | ||| |||||||||||||| |||||| |
|
|
| T |
49399718 |
actttgatggaagatatgttgaaaattaacaattcaatct |
49399757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 467
Target Start/End: Original strand, 5952770 - 5953225
Alignment:
| Q |
12 |
aagaatatcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattc |
111 |
Q |
| |
|
|||| ||||||| | ||||||||||| || ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5952770 |
aagagtatcatctaaaagggaatgatagagatgaggagggcagaaaatccaagactttagagcattcgaagaagaagcaccatgcttagcaagccaatct |
5952869 |
T |
|
| Q |
112 |
gcacactcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgat |
211 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5952870 |
gcacactcgttaccttgacgaagggtatgctgaaaatgaacaatccaatctcgatgttgcagttggacaatctgactaatcataggagcatgaggatgat |
5952969 |
T |
|
| Q |
212 |
gagattggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatg |
311 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||| ||||| |
|
|
| T |
5952970 |
gagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcccgtggcccgcatcatacgcaacacgaaggccatg |
5953069 |
T |
|
| Q |
312 |
aaaaatggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctcca |
411 |
Q |
| |
|
||||||| ||||||||||||| | ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5953070 |
aaaaatgacatacaattcggctgccaaacaagaagtaataccacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctcca |
5953169 |
T |
|
| Q |
412 |
aaacctaatcttccaggattagaaagagaactaccgtcaacattaactttgatgat |
467 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5953170 |
aaacctgatctcccaggattagaaagagaactaccgtcaacattaacttttatgat |
5953225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 38024824 - 38024624
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||||||||||| | ||| |||||| |||||||||||| ||||||||||||| |||| ||||||| |
|
|
| T |
38024824 |
atcatccagatgggaatgatgcagttgaggagagcaaacaatccaaaactttggagcatctgaagaagaagcatcatgcttagcaagtcaatccgcacac |
38024725 |
T |
|
| Q |
118 |
tcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38024724 |
tcgttgccttgacggagggtatgatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
38024625 |
T |
|
| Q |
218 |
g |
218 |
Q |
| |
|
| |
|
|
| T |
38024624 |
g |
38024624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 150 - 494
Target Start/End: Complemental strand, 13583585 - 13583242
Alignment:
| Q |
150 |
aacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattggacatccaacatgattaaattgagagccatc |
249 |
Q |
| |
|
||||| |||||||||||| || || |||| ||||| | |||||| ||||||| ||||||| ||| ||| |||||||||||||||| || |||||| | |
|
|
| T |
13583585 |
aacaacccaatctcgatgatggagatggataatcttagtaatcaaaggagca--aggatgacgaggttgaacatccaacatgattagataatgagccacc |
13583488 |
T |
|
| Q |
250 |
ctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaaatggcatacaattcggccgtcaagtaagaagt-a |
348 |
Q |
| |
|
|||||||| || |||||||||||| | |||| || ||||||| ||||||||||| | |||||| ||||||||||||| || | ||| ||||| | | |
|
|
| T |
13583487 |
ctagaatcagattcaagaataatgctcttgtgtccaacatcatatgcaatacgaaggctatgaaaggtggcatacaattcagctctgaagcaagaaataa |
13583388 |
T |
|
| Q |
349 |
ataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaacctaatcttccaggattagaaagagaactaccgt |
448 |
Q |
| |
|
||||||||||| |||| ||| || |||| ||| ||||||||||||||| |||||| ||||||||| | || | | | ||||||||||| |||||| | |
|
|
| T |
13583387 |
ataccacaaaaaccagtgaaactcaacaactaattaccattattgtttctcataagatctccaaaacgtgatatcctatgattagaaagaaaactactat |
13583288 |
T |
|
| Q |
449 |
caacattaactttgatgatattatccaaaggaggaatccatttaac |
494 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
13583287 |
caacattaactttggtgatattatccaaaggaagaatttatttaac |
13583242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 33192840 - 33192694
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33192840 |
atcatccagaagggaatgatgtagttgaggagggcaaacaatccaagactttagagcat------------caccatgcttagcaagccaattcgcacac |
33192753 |
T |
|
| Q |
118 |
tcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttg |
176 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33192752 |
tcgtttccttgacggagggtatgatgaaaattaacaattcaatctcgatgttgcagttg |
33192694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 434 - 513
Target Start/End: Complemental strand, 37810407 - 37810328
Alignment:
| Q |
434 |
aaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctgtataatgggcttctga |
513 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
37810407 |
aaagagaattaccgttaacattaactttgataatattatttaaaggaggaattcatttaacctgtctaatgggcttctga |
37810328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 46920891 - 46920735
Alignment:
| Q |
16 |
atatcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcac |
115 |
Q |
| |
|
||||||| ||||||| ||||||||| ||| ||| |||| ||||||||| |||||||||| ||| || || |||||| |||| ||||||||| || || |
|
|
| T |
46920891 |
atatcattcagaagg-aatgatgcatttgaagagagcaagaaatccaagactttagagcatccgataaataaacaccatacttaacaagccaatccgtac |
46920793 |
T |
|
| Q |
116 |
actcgttg---ccttgacggagggtataatgaaaattaacaatccaatctcgatgttg |
170 |
Q |
| |
|
|||||||| |||||||||| ||||| || ||||||||||||||||| | ||||||| |
|
|
| T |
46920792 |
actcgttgttgccttgacggaaggtatgataaaaattaacaatccaattttgatgttg |
46920735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 55428846 - 55429333
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||||||| ||||||||| |||| ||||| | || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
55428846 |
atcatccagaagggaacgatgcagttgaggggggcaaaaaatccaagactttaaagcatccaaataagaagcaccatgcttagcaagccaatccgcacac |
55428945 |
T |
|
| Q |
118 |
tcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagatt |
217 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55428946 |
tcgttaccttgacggagggtatgatgaaaatgaacaatccaatctagatgttg------gacaatctgactaatcagaggagcatgaggatgatgagatt |
55429039 |
T |
|
| Q |
218 |
ggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatg-aaaaa |
316 |
Q |
| |
|
||||||| |||||||||||| | ||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||||| || || ||||| |
|
|
| T |
55429040 |
cgacatccgacatgattaaatcaatagccatcctggaatctgattcaagaataatgttcatgtggcccgcatcatacgcaatacgaaggccgtgcaaaaa |
55429139 |
T |
|
| Q |
317 |
tggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaacc |
416 |
Q |
| |
|
||||||||||||| || | |||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55429140 |
tggcatacaattcagctgccaagcaggaagtaataccacaaaatccagaaaaacccagcaaccagtcaccattattgtttctaataagacctccaaaacc |
55429239 |
T |
|
| Q |
417 |
taatcttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctgtataatgggcttc |
510 |
Q |
| |
|
| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
55429240 |
tgatctcccaggatttgaaagagaactaccgtcaacattaactttgataatattatccaaatgaggaatccatttaacctgtctaatggccttc |
55429333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 29018496 - 29018988
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcaca- |
116 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
29018496 |
atcatccaaaagggaatgatgcagttgaggagggcaaaaactccaagattttagagcatatgaagaagaagcaccatgctttgcaagccaatccgcacac |
29018595 |
T |
|
| Q |
117 |
-ctcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgaga |
215 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29018596 |
actcgttgccttgacggatggaatgttgaaaattgacaatccaatctcgatgttgtagttggacaatctgactaatcagaggagcatgaggatgatgagg |
29018695 |
T |
|
| Q |
216 |
ttggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaa |
315 |
Q |
| |
|
|||||||||| ||||||||| || |||| || | |||||||| | |||||||||||||| ||| ||||||||| || |||||||||| ||||||||| |
|
|
| T |
29018696 |
ttggacatccgacatgattagatcaagagtcaccttagaatctaattcaagaataatgttcatgtgacccgcatcacacacaatacgaaggccatgaaaa |
29018795 |
T |
|
| Q |
316 |
atggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaac |
415 |
Q |
| |
|
||||||||||||| ||| | |||| ||||||||||||||||||| |||||||| | || ||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
29018796 |
atggcatacaatttggcagccaagcaagaagtaataccacaaaaatcagaaaaacaaaacatccaatcaccattatt-tttttgataagacctccaaaac |
29018894 |
T |
|
| Q |
416 |
ctaatcttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacctgtataatgggctt |
509 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| | ||||||| |||||| |||| |
|
|
| T |
29018895 |
ctgatcttccaagattagaaagagaactaccgtcaacgttaactttgatgatattatctaaatgaggaatctacttaacctacataatgagctt |
29018988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 444
Target Start/End: Original strand, 17065116 - 17065474
Alignment:
| Q |
80 |
aagaagaagcaccatgcttagcaagccaattcgcacactcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggac |
179 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |||||||||||||||| |||| |||| ||||||||||||||||| ||||||| || || ||||| |
|
|
| T |
17065116 |
aagaagaagcaccatgtttagcaagtcaattcgtacactcgttgccttgatggagagtatgatgaaaattaacaatcctatctcgacaatggagctggac |
17065215 |
T |
|
| Q |
180 |
aatctgactaa-tcagaggagcatgaggatgatgagattggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgttttt |
278 |
Q |
| |
|
||||| ||||| | | | | || ||||||||||| ||||| || | |||| ||||||| |||| || ||||||||| || ||||||||| | |
|
|
| T |
17065216 |
aatctaactaattaaaaaaaacaaaaggatgatgaggttggaaattcgacataattaaatcaagagtcaccctagaatcggattcaagaata-------t |
17065308 |
T |
|
| Q |
279 |
gtagcccgcatcatacgcaatacgaagaccatgaaaaatggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatccagcaac |
378 |
Q |
| |
|
|| | ||||||| | || |||||| ||| ||||||||||||||||| || | ||||||| || |||||||| |||| || | ||| ||| |||| |
|
|
| T |
17065309 |
gtgatcatcatcataagtaacacgaaggtcatataaaatggcatacaattctgctgccaagtaaaaaataataccataaaaatcaaagaaacccaacaac |
17065408 |
T |
|
| Q |
379 |
caatcaccattattgtttctaataagacctccaaaacctaatcttccaggattagaaagagaacta |
444 |
Q |
| |
|
||||||| |||| | |||| ||||||| |||||||| |||||||| |||||| ||||||||| |
|
|
| T |
17065409 |
caatcactattactacttcttttaagaccgtcaaaaccttatcttccaatattagatagagaacta |
17065474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 9992824 - 9993025
Alignment:
| Q |
30 |
ggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacactcgttgccttga |
129 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
9992824 |
ggaatgatgcagttgaggagggcaaacgattcaagattttagagcatccgaagaagaagcaccatgcttagta-gccaatccgcacactcgttgccttga |
9992922 |
T |
|
| Q |
130 |
cggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattggacatccaaca |
229 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
9992923 |
cgaagggtatgatgaaaattaacaatccaatctcgacgatgcagttggacaatttgactaatcaaaggagcatgaggatgataagattggacatccgaca |
9993022 |
T |
|
| Q |
230 |
tga |
232 |
Q |
| |
|
||| |
|
|
| T |
9993023 |
tga |
9993025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 9388762 - 9388963
Alignment:
| Q |
21 |
atccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacactcg |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
9388762 |
atccagaagggaatgatgcagttgaggagcacaaacaatccaaaactttagagcatccgaagaagaagcaccatacttagcaagccaatctgcacactca |
9388861 |
T |
|
| Q |
121 |
ttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgagattgga |
220 |
Q |
| |
|
|| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
9388862 |
atgtcttgacagagggtatgatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaataagaggagcatcaggatgatgatattgga |
9388961 |
T |
|
| Q |
221 |
ca |
222 |
Q |
| |
|
|| |
|
|
| T |
9388962 |
ca |
9388963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 116 - 495
Target Start/End: Complemental strand, 29763367 - 29762985
Alignment:
| Q |
116 |
actcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatgaga |
215 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||||||| |||||| | | || || ||||||||||| || | |||||||| |||||||| | |
|
|
| T |
29763367 |
actcattgccttgacggagggtttgatgaaaattaacaatttaatctctacgatggagcccgacaatctgacagattataggagcataaggatgataaag |
29763268 |
T |
|
| Q |
216 |
ttggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacgaagaccatgaaaa |
315 |
Q |
| |
|
||||||||| || ||||||||| ||||||| ||||| ||| | |||||||||||||| |||| ||| ||||||||| ||||||||| |||||||| |
|
|
| T |
29763267 |
ttggacatctgacgtgattaaatcaagagccaccctagtatcaaattcaagaataatgttcttgtgccccacatcatacgtaatacgaaggtcatgaaaa |
29763168 |
T |
|
| Q |
316 |
atggcatacaattcggccgtcaagtaagaagtaata---ccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaa |
412 |
Q |
| |
|
||| |||| ||||| | || ||| ||||||||||| |||||||| | | |||| ||| ||| |||||||||||||||||||| |||||||||| || |
|
|
| T |
29763167 |
atgacatataattctgtcgctaagcaagaagtaataaaaccacaaaaatccggaaaacccaacaatcaatcaccattattgtttcttataagacctcaaa |
29763068 |
T |
|
| Q |
413 |
aacctaatcttccaggattagaaagagaactaccgtcaacattaactttgatgatattatccaaaggaggaatccatttaacc |
495 |
Q |
| |
|
|| ||||| ||||||| |||||||||||| |||||||| ||||||||||||||||| | |||| || |||||||||||| |
|
|
| T |
29763067 |
ttcccgatctttcaggattggaaagagaactatcgtcaacaataactttgatgatattaatcgaaggcgggatccatttaacc |
29762985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 7812957 - 7813105
Alignment:
| Q |
18 |
atcatccagaagggaatgatgcagctgaggagggcaaacaatccaagattttagagcattcgaagaagaagcaccatgcttagcaagccaattcgcacac |
117 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||| |||||| ||| ||||| |||||||||| |||||||||| | |||||||||||| || | |||||| |
|
|
| T |
7812957 |
atcatccaaaagagaatgatgcagtcgaggaaggcaaaaaattcaagactttagagcatctgaagaagaagtaacatgcttagcaaatcattctgcacac |
7813056 |
T |
|
| Q |
118 |
tcgttgccttgacgg---agggtataatgaaaattaacaatccaatctc |
163 |
Q |
| |
|
|| || |||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
7813057 |
tcattaccttgatggagaagggtatgatgaaaattaacaatccaatctc |
7813105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 464
Target Start/End: Complemental strand, 16091147 - 16091022
Alignment:
| Q |
340 |
taagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtttctaataagacctccaaaacctaatcttccaggattaga-aaga |
438 |
Q |
| |
|
|||||||||||||||||||| || | | | ||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||| | || | | || | |
|
|
| T |
16091147 |
taagaagtaataccacaaaaatcaaagatacccaacaataaatcaccatcattgtttcttataagacctccaaaacctaatcttcaaaaataaaataaaa |
16091048 |
T |
|
| Q |
439 |
gaactaccgtcaacattaactttgat |
464 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
16091047 |
aaattaccgtcaacattaactttgat |
16091022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 498
Target Start/End: Complemental strand, 29762948 - 29762911
Alignment:
| Q |
461 |
tgatgatattatccaaaggaggaatccatttaacctgt |
498 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
29762948 |
tgatgatattatccgaaggaggaatcaatttaacctgt |
29762911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 94 - 403
Target Start/End: Original strand, 35946722 - 35947027
Alignment:
| Q |
94 |
tgcttagcaagccaattcgcacactcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatca |
193 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| || ||| ||||| ||||||| |||| |||||| |||| |||| ||||||||||||||| |
|
|
| T |
35946722 |
tgcttagcaagtcaatccgcacactcgttgccttgacagaaggt-----gaaaaataacaattcaatttcgatgatgcaattgggcaatctgactaatca |
35946816 |
T |
|
| Q |
194 |
gaggagcatgaggatgatgagattggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcata |
293 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||| || |||| ||||| ||||| ||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
35946817 |
aaggagcatatggatgatgatgttgggcatccaacatgattagatcaagagtcatccaagaatatgattcaagaataatgttcatgtgtcccgcatcata |
35946916 |
T |
|
| Q |
294 |
cgcaatacgaagaccatgaaaaatggcatacaattcggccgtcaagtaagaagtaataccacaaaatccagaaaaatc-cagcaaccaatcaccattatt |
392 |
Q |
| |
|
|||||||| ||| | ||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||| | || |||||||||| ||||||| |
|
|
| T |
35946917 |
cgcaatacaaaggtcttgaaaaatgacatgcaattcggccgtcaaacaagaagtaataccacaaaaaccagaaaaaacgcaacaaccaatcatcattatt |
35947016 |
T |
|
| Q |
393 |
gtttctaataa |
403 |
Q |
| |
|
||||| |||| |
|
|
| T |
35947017 |
atttcttataa |
35947027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 79 - 349
Target Start/End: Complemental strand, 28175400 - 28175138
Alignment:
| Q |
79 |
gaagaagaagcaccatgcttagcaagccaattcgcacactcgttgccttgacggagggtataatgaaaattaacaatccaatctcgatgttgcagttgga |
178 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||| |
|
|
| T |
28175400 |
gaagaagaaacaccatgcttaacaagccaatttgcacactcgttgccttgacggagggtatgatgaaaattaacattccaatctcgatgttgtaattgga |
28175301 |
T |
|
| Q |
179 |
caatctgactaatcagaggagcatgaggatgatgagattggacatccaacatgattaaattgagagccatcctagaatctgactcaagaataatgttttt |
278 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||||| ||| |||||| ||| ||||| || ||||||| || || |||||||||||||| | |
|
|
| T |
28175300 |
caatcttactaataagaggagcatgaaaatgatgaggttgaacatccgacaagattagatcaagagccaccc--------gattcaagaataatgttcat |
28175209 |
T |
|
| Q |
279 |
gtagcccgcatcatacgcaatacgaagaccatgaaaaatggcatacaattcggccgtcaagtaagaagtaa |
349 |
Q |
| |
|
| || ||||||||| ||| |||||| |||||||||||||||| |||| | |||||||| ||| ||||| |
|
|
| T |
28175208 |
attccctgcatcatacacaagacgaaggtcatgaaaaatggcatataatttgaccgtcaagcaagtagtaa |
28175138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 6642351 - 6642291
Alignment:
| Q |
187 |
ctaatcagaggagcatgaggatgatgagattggacatccaacatgattaaattgagagcca |
247 |
Q |
| |
|
||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
6642351 |
ctaatcacaggagaataaggataatgaggttggacatccaacatgattaaatcaagagcca |
6642291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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