View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_low_44 (Length: 284)
Name: NF20885_low_44
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 19785618 - 19785878
Alignment:
| Q |
17 |
aaaatcagccttgttgctaaatggtgcccttctgttgagtcttcctttgatcgatcgactcttctgtgtgagagtattgccaagaggatcttccctcggg |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19785618 |
aaaatcagccttgctgctaaatggtgcccttctgttgactcttcctttgatcgatcgactcttctgtgtgagagtattgcaaagaggatcttccctcggg |
19785717 |
T |
|
| Q |
117 |
aggaatatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19785718 |
aggaatatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcc |
19785817 |
T |
|
| Q |
217 |
tgaggtgtttattggtgctaatcaatggggtttgattccttacaatagggttgcttctgtg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19785818 |
tgaggtgtttattggtgctaatcaatggggtttgattccttacaatagagttgcttctgtg |
19785878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 19795969 - 19795709
Alignment:
| Q |
17 |
aaaatcagccttgttgctaaatggtgcccttctgttgagtcttcctttgatcgatcgactcttctgtgtgagagtattgccaagaggatcttccctcggg |
116 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||| |||||||||| ||| |
|
|
| T |
19795969 |
aaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttgatcggtcaactcttctgtgtgagaccattgccaagaagatcttccctaggg |
19795870 |
T |
|
| Q |
117 |
aggaatatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19795869 |
aggagtatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcggttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcc |
19795770 |
T |
|
| Q |
217 |
tgaggtgtttattggtgctaatcaatggggtttgattccttacaatagggttgcttctgtg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19795769 |
tgaggtgtttattggtgctaatcaatggggtttgattccatacaatagggttgcttctgtg |
19795709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 15835276 - 15835016
Alignment:
| Q |
17 |
aaaatcagccttgttgctaaatggtgcccttctgttgagtcttcctttgatcgatcgactcttctgtgtgagagtattgccaagaggatcttccctcggg |
116 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||| || | |||||||||||||| || |||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
15835276 |
aaaatcagtcttgctgctaaatggtgcccctctctttactcttcctttgatcggtcaactcttctgtgtgagaccattgccaagaggatattccctcggg |
15835177 |
T |
|
| Q |
117 |
aggaatatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcc |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |
|
|
| T |
15835176 |
aggaatatgaaggtgtggaggaggcgcattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggcgttgcaattgcc |
15835077 |
T |
|
| Q |
217 |
tgaggtgtttattggtgctaatcaatggggtttgattccttacaatagggttgcttctgtg |
277 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15835076 |
tgaggtgtttattggggctaatcaatggggtttgattccttataatagggttgcttctgtg |
15835016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 277
Target Start/End: Complemental strand, 47712859 - 47712608
Alignment:
| Q |
26 |
cttgttgctaaatggtgcccttctgttgagtcttcctttgatcgatcgactcttctgtgtgagagtattgccaagaggatcttccctcgggaggaatatg |
125 |
Q |
| |
|
|||| ||| |||||||| ||||| ||||| ||||| |||||| | |||| | ||||||||||||| || |||||||| || ||| ||||||| |||| |
|
|
| T |
47712859 |
cttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtgagagtatcgcgaagaggatttttcctagggaggagtatg |
47712760 |
T |
|
| Q |
126 |
aaggtgtggaggaggcacattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcctgaggtgtt |
225 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
47712759 |
aaggtgtggaggaggcgcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccattgaggaaggttttggagttgcctgaggtgtt |
47712660 |
T |
|
| Q |
226 |
tattggtgctaatcaatggggtttgattccttacaatagggttgcttctgtg |
277 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||||| |||||||| |||||| |
|
|
| T |
47712659 |
tattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtg |
47712608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University