View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_48 (Length: 273)
Name: NF20885_low_48
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1613978 - 1613731
Alignment:
| Q |
1 |
aggaattggaagcgctaaacacttcatcagacaagaaagtacactttatggcacatgttgatagaagtggtagagatttgatgatcgttaaaacagctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1613978 |
aggaattggaagcgctaaacacttcatcagacaagaaagtacactttatggcacatgttgatagaagtggtagagatttgatgatcgttaaaacagctta |
1613879 |
T |
|
| Q |
101 |
ggggacttatgttgatatttactatgacaaaggtttgtagtatggcaatttgtgaaaagttgtaatgagtattgtaattggtagtgttggcacaattatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1613878 |
ggggacttatgttgatatttactatgacaaaggtttgtagtatggcaatttgtgaaaagttataatgagtattgtaattggtagtgttggcacaattatg |
1613779 |
T |
|
| Q |
201 |
ctgtctccatacttcttttattagtaatgttaatttttcattaaatag |
248 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1613778 |
ctgtctccatacttctttcattagtaatgttaatttttcattaaatag |
1613731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 24457253 - 24457496
Alignment:
| Q |
1 |
aggaattggaagcgctaaacacttcatcagacaagaaagtacactttatggcacatgttgatagaagtggtagagatttgatgatcgttaaaacagctta |
100 |
Q |
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||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
24457253 |
aggaattggaagcactaaacacttcaacagacaag----tacactttatggcatatgttgatgtaagtggtaaagatttgatgatcgttaaaacaactta |
24457348 |
T |
|
| Q |
101 |
ggggacttatgttgatatttactatgacaaaggtttgtagtatggcaatttgtgaaaagttgtaatgagtattgtaattggtagtgttggcacaattatg |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
24457349 |
ggggacttatgttgatatttactatgacaaagatttgtagtgtgacaatttgtgaatagttgtaatgagtattgtaattggtagtgttggcacaattgtg |
24457448 |
T |
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| Q |
201 |
ctgtctccatacttcttttattagtaatgttaatttttcattaaatag |
248 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24457449 |
atgtctccatacttctttcattagtaatgttaatttttcattaaatag |
24457496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 24786144 - 24785896
Alignment:
| Q |
1 |
aggaattggaagcgctaaacacttcatcagacaagaaagtacactttatggcacatgttgatagaagtggtagagatttgatgatcgttaaaacagctt- |
99 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24786144 |
aggaattggaagcgctaaacacttcaacagacaagaaagtacactttatggcatatgttgatggaagtggtagagatttgatgatcgttaaaacagcttt |
24786045 |
T |
|
| Q |
100 |
aggggacttatgttgatatttactatgacaaaggtttgtagtatggcaatttgtgaaaagttgtaatgagtattgtaattggtagtgttggcacaattat |
199 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24786044 |
aggggacttatgttgatatttactatgacaaagatttgtagtataacaatttgtgaaaagttgtaatgagtattgtaattggtagtgttggcacaattat |
24785945 |
T |
|
| Q |
200 |
gctgtctccatacttcttttattagtaatgttaatttttcattaaatag |
248 |
Q |
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|| |||||||||||||||| ||||||| |||||||||| ||| |||||| |
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| T |
24785944 |
gccgtctccatacttctttcattagtactgttaattttccatcaaatag |
24785896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 43229369 - 43229621
Alignment:
| Q |
1 |
aggaattggaagcgctaaacacttcatcagacaagaaagtacactttatggcacatgttgatagaagtggtagagatttgatgatcgttaaaacagctta |
100 |
Q |
| |
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|||||||||||| ||||||||||||| || |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||| | ||||| |
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| T |
43229369 |
aggaattggaagagctaaacacttcaacatgcaagaaagtacagtttatggcatatgttgatggaagtggtagagatttgatgatcactaa--cggctta |
43229466 |
T |
|
| Q |
101 |
ggggacttatgttgatatttactatgacaaaggtttgtagtatggcaatttgtgaaaagttgtaatgagtattgtaattggtagtgttggcacaattatg |
200 |
Q |
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||||| || |||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| ||| || |
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| T |
43229467 |
ggggagttgtgttgatatttactgtgacaaaggtttgtagtatgacgatttgtgaaaagttgtaatgagtattgtaatcggtagtgttggcactattgtg |
43229566 |
T |
|
| Q |
201 |
ctgtctccatacttcttttattagtaatgttaatttttcattaaatagtcaggtt |
255 |
Q |
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||||||||||| || || ||||||||| ||||||||||||||||||| |||||| |
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| T |
43229567 |
ttgtctccatacatcattcattagtaatattaatttttcattaaatagccaggtt |
43229621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 68 - 248
Target Start/End: Complemental strand, 4735623 - 4735443
Alignment:
| Q |
68 |
tggtagagatttgatgatcgttaaaacagcttaggggacttatgttgatatttactatgacaaaggtttgtagtatggcaatttgtgaaaagttgtaatg |
167 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4735623 |
tggtagagatttgatgatcgttaaaacggcttaggggacttatgttgatatttactataacaaaggtttgtagtatggcaatttgtgaaaagttgtaatg |
4735524 |
T |
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| Q |
168 |
agtattgtaattggtagtgttggcacaattatgctgtctccatacttcttttattagtaatgttaatttttcattaaatag |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
4735523 |
agtattgtaattggtagtgttggcacaattatgctgccttcatgcttctttcattagtaatgttaatttttcattaaatag |
4735443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 68 - 248
Target Start/End: Complemental strand, 44709766 - 44709588
Alignment:
| Q |
68 |
tggtagagatttgatgatcgttaaaacagcttaggggacttatgttgatatttactatgacaaaggtttgtagtatggcaatttgtgaaaagttgtaatg |
167 |
Q |
| |
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|||||||||||||||||||| ||| || ||||| | |||||||||||||||||| ||||||||| | |||| |||| | |||| |||||||||||||| |
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| T |
44709766 |
tggtagagatttgatgatcgctaa--caacttagagtacttatgttgatatttaccatgacaaagctatgtactatgaccgtttgggaaaagttgtaatg |
44709669 |
T |
|
| Q |
168 |
agtattgtaattggtagtgttggcacaattatgctgtctccatacttcttttattagtaatgttaatttttcattaaatag |
248 |
Q |
| |
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||||||||||||||||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44709668 |
agtattgtaattggtagtgttggcataattgtgctatctccatacatcttttattagtaatgttaatttttcattaaatag |
44709588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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