View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_5 (Length: 744)
Name: NF20885_low_5
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 586
Target Start/End: Complemental strand, 48013772 - 48013184
Alignment:
| Q |
18 |
ctttttatctggagagtttattgaatcagtttattatcttttcaatatgattatttcttttaagattctatctcattgatccaaaaatgttcgaacgaga |
117 |
Q |
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| T |
48013772 |
ctttttatctggagagtttattgaatcagttcattatcttttcaatatgattatttcttttaagattctatctcattgatccaaaaatgttcgaacgaga |
48013673 |
T |
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| Q |
118 |
tgattgttatt----------aacgatcatgagtttgaattgaaactnnnnnnntatgattgttataaaatcctatttcgaattctatttggatagtgat |
207 |
Q |
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| T |
48013672 |
tgattgttatttcttttaattaacgatcatgagtttgaattcaaactaaaaaaatatgattgttataaaatcctatttcgaattctatttggatagtgat |
48013573 |
T |
|
| Q |
208 |
tattctaagaattatgtgcacatgactttgttgttgatgctataggatttggaatctgattgcatgtggattaataaaatcccagtcaactgcaccgtgc |
307 |
Q |
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| T |
48013572 |
tattctaagaattatgtgcacatgactttgttgttgatgctataggatttggtatctgattgcatgtggattaataaaatcccagtcaactgcaccgtgc |
48013473 |
T |
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| Q |
308 |
cctnnnnnnntttt---cacattctaccactcatat------------atttccaccttccacacacacgnnnnnnnnntctannnnnnnaaaggaagac |
392 |
Q |
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| T |
48013472 |
cctaaatttttttttttcacattctaccactcatattatccgctctatatttccaccttccacacacacgaaaaaaaa-tctatttttttaaaggaagac |
48013374 |
T |
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| Q |
393 |
tctacttttttaccatagaaccaaacacatgcatgcttaagatcttgatcacctataaatatgcataaatggtgatattggtaatgtaccagtacagctg |
492 |
Q |
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| T |
48013373 |
tctacttttttaccatagaaccaaacacatgcatgcttaagatcttaatcacctata----tgcataaatggtgatattggtaatgtaccagtacagctg |
48013278 |
T |
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| Q |
493 |
tagagactatacaaaacaacaagaggaatggattctatttctctagtgctatcttttaaccacgtcacataattaatgagtcacatgaaataaa |
586 |
Q |
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| T |
48013277 |
tagagactatacaacacaacaagaggaatggattctatttctctagtgctatcttttaaccacgtcacataattaatgagtcacatgaaataaa |
48013184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 609 - 728
Target Start/End: Complemental strand, 48013184 - 48013065
Alignment:
| Q |
609 |
accacatactatgccaaacactatgcaccgtttatattcaaaatagcatgatatannnnnnnccttatttgtgttgcgaatcaggtttgtaatgtacctt |
708 |
Q |
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| T |
48013184 |
accacatactatgccaaacactatgcaccgtttatattcaaaatagcatgatatgtttttttccttatttgtgctgcgaatcaggtttgtaatgtacctt |
48013085 |
T |
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| Q |
709 |
atcaaatctttttattggag |
728 |
Q |
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| T |
48013084 |
atcaaatctttttattggag |
48013065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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