View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_50 (Length: 264)
Name: NF20885_low_50
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_50 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 31713453 - 31713700
Alignment:
| Q |
17 |
caacacataaatagagataaacatgtttgatatggcaaaccaagtagaaatagcgcattcgtgtgtagcacgaaaaatcttgtcgtgttgaaaatttggt |
116 |
Q |
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| T |
31713453 |
caacacataaataaagagaaacgtgtttgatatggcaaaccaagtagaaatagtgcattcgtgtgtagcacgaaaaatcttgtcgtgttgaaaatttggt |
31713552 |
T |
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| Q |
117 |
cgtgttgaaaattcgagtatatgttcatttgaatattgaatatatacacagaaatggtaggtaattaagttttccccttaacatagttgcgttccagaag |
216 |
Q |
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| T |
31713553 |
cgtgttgaaaattcgtgtatatattcatttgaatattgaatatatacacagaaatggtaggtaattaagttttccccttaacatagttgcgttccagaag |
31713652 |
T |
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| Q |
217 |
tgttgattattactaataaccaactaggcttataaatagaggccaaaa |
264 |
Q |
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| T |
31713653 |
tgttgattattactaataaccaactaggcttataaatagaggccaaaa |
31713700 |
T |
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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 4118768 - 4118856
Alignment:
| Q |
17 |
caacacataaatagagataaacatgtttgatatggcaaaccaagtagaaatagcgcattcgtgtgtagcacgaaaaatcttgtcgtgtt |
105 |
Q |
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| T |
4118768 |
caacacataaatagagagaaacatgtttgatatggcaaaccaagtagaaatagtgcattcgtgtgtagcacgaaaaatcttgtcgtgtt |
4118856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 41488103 - 41488014
Alignment:
| Q |
17 |
caacacataaatagagataaacatgtttgatatggcaaaccaagtagaaatagcgcattcgtgtgtagcacga-aaaatcttgtcgtgtt |
105 |
Q |
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| T |
41488103 |
caacacataaatagagagaaacgtgtttgatatggcaaaccaagtagaaatagcgcattcgtgtgtagcacgaaaaaatcttgtcatgtt |
41488014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 50498118 - 50498030
Alignment:
| Q |
17 |
caacacataaatagagataaacatgtttgatatggcaaaccaagtagaaatagcgcattcgtgtgtagcacgaaaaatcttgtcgtgtt |
105 |
Q |
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||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
50498118 |
caacacataaatagagagaaacgtgtttgatatgacaaaccaagtagaaatagcgcattcgtgtgtagcacgaaaatttttgtcgtgtt |
50498030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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