View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_low_51 (Length: 259)
Name: NF20885_low_51
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 42875567 - 42875817
Alignment:
| Q |
1 |
ttgatgatcacaactcgaaaattgtgtttatttgaacgacgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcatataaattttcgatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42875567 |
ttgatgatcacaactcgaaaattgtgtttatttgaacgacgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcgtataaattttcgatac |
42875666 |
T |
|
| Q |
101 |
acgtcaaaggaggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875667 |
acgtcaaaggaggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaaca |
42875766 |
T |
|
| Q |
201 |
caagaataagccgttggaacaaccgcatatgctgctgcctttacctttgat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875767 |
caagaataagccgttggaacaaccgcatatgctgctgcctttacctttgat |
42875817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 42751258 - 42751144
Alignment:
| Q |
119 |
gatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttgga |
218 |
Q |
| |
|
|||||||||||| ||||| | |||| || || |||||||||||||||||| || || || |||||| ||| || ||| ||||||||||||| || ||||| |
|
|
| T |
42751258 |
gatcaggtatatggatacactctttaacgagtggatcataaacataatagacggtagcacatgtgtcccgattcttagaacacaagaataaaccattgga |
42751159 |
T |
|
| Q |
219 |
acaaccgcatatgct |
233 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
42751158 |
acaaccacatatgct |
42751144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 1050207 - 1050295
Alignment:
| Q |
141 |
tttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcata |
229 |
Q |
| |
|
||||| ||| ||||| |||| ||||||| || ||||||| ||||| || || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1050207 |
tttcataagtggatcgtaaatataatagtcgataccataggtgtatcgattcttacaacacaagaataaaccgttggaacaaccgcata |
1050295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University