View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_55 (Length: 251)
Name: NF20885_low_55
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_55 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 34361303 - 34361064
Alignment:
| Q |
12 |
agagaggtataggccggcactgtttcgaataattcctccataacctgcgcgagttggaataccggaacaacttccatctacatttagaatgtgacagaga |
111 |
Q |
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| T |
34361303 |
agagaggtataggccggcactgtttcgaataattcctccataacctgcgcgagttggaataccggaacaacttccatctacatttagaatgtgacagaga |
34361204 |
T |
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| Q |
112 |
tggttattactattccatctaaccattcgatcatgaggagtggcactgctgttttgaaagctggattttatggtatccgcagaattctgaatgtggaaac |
211 |
Q |
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| T |
34361203 |
tggttattactattccatctaaccattcgatcatgaggagtggcactgctgttttgaaagctggattttatggtatccgcagaattctgaatgtagaaac |
34361104 |
T |
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| Q |
212 |
taagttgcataagggaccaagtatcattgctaaggcacat |
251 |
Q |
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| T |
34361103 |
taagtcgcgtaagggaccaagtatcattgctaaggcacat |
34361064 |
T |
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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 26701970 - 26702067
Alignment:
| Q |
11 |
cagagaggtataggccggcactgtttcgaataattcctccataacctgcgcgagttggaataccggaacaacttccatctacatttagaatgtgacag |
108 |
Q |
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| T |
26701970 |
cagagaggtaaaggccgacactgtttcgaataattcccccataacctgcgcgagttggagtaccggaacaactcccatccacatttagaatatgacag |
26702067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 26702069 - 26702156
Alignment:
| Q |
156 |
actgctgttttgaaagctggattttatggtatccgcagaattctgaatgtggaaactaagttgcataagggaccaagtatcattgcta |
243 |
Q |
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| T |
26702069 |
actgttgttttgaaagctggtttttatggtatctgcaaaattctgaatgtggaaactaagtcgcgtaagggaccaagtatcattgcta |
26702156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 46954473 - 46954531
Alignment:
| Q |
11 |
cagagaggtataggccggcactgtttcgaataattcctccataacctgcgcgagttgga |
69 |
Q |
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| T |
46954473 |
cagagaggtataaaccggcactgttacgaataactcccccaaaacctgcgcgaattgga |
46954531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 50234839 - 50234972
Alignment:
| Q |
11 |
cagagaggtataggccggcactgtttcgaataattcctccataacctgcgcgagttggaataccggaacaacttccatctacatttagaatgtgacagag |
110 |
Q |
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| T |
50234839 |
cagagaggtataagccggcactgttacgaataactcccccaaagcctgcacgaattggagttcatgaacaactcccatccacattaaggatatggcagtg |
50234938 |
T |
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| Q |
111 |
atggttattactattccatctaaccattcgatca |
144 |
Q |
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| T |
50234939 |
atgattattgctgttccatttgaccatacgatca |
50234972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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