View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_56 (Length: 249)
Name: NF20885_low_56
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 45546029 - 45545798
Alignment:
| Q |
1 |
caggttttagatacttaatttaaaaacattctacaaaaa-tattctgaaacattttgtatttggatgttgtacaggttatgacagtgaagatgttaagag |
99 |
Q |
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| T |
45546029 |
caggttttagatacttaatttaaaaacattctacaaaaaatattctgaaacattttgtatttggatgttgtacagattatgacagtgaagatgttaagag |
45545930 |
T |
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| Q |
100 |
tgctacgcctacacctgaatctgagaaagttgaaaatttaggaaattcaggaattggttttgaaggtacaaaatttacaggacaagaacctcatcatgct |
199 |
Q |
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| T |
45545929 |
tgctacgcctacacctgaatctgagaaagttgaaaatttaggaaattcaggaattggttttgaaggtacaaaatttacaggacaagaacctcatcatgct |
45545830 |
T |
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| Q |
200 |
ccactagttgaaggtgtttcttcaaccactga |
231 |
Q |
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| T |
45545829 |
ccactagttgaaggtgtttcttcaaccactga |
45545798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 45551209 - 45551094
Alignment:
| Q |
59 |
tttggatgttgtacaggttatgacagtgaagatgttaagagtgctacgcctacacct------gaatctgagaaagttgaaaatttaggaaattcaggaa |
152 |
Q |
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|||||||||||||||| |||||||||||||||||| || |||||||| ||||||||| ||| ||| ||| ||||||||||||||||||||||| |
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| T |
45551209 |
tttggatgttgtacagtttatgacagtgaagatgtcaaaagtgctacacctacacctacaccaacatccgagcaagatgaaaatttaggaaattcaggaa |
45551110 |
T |
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| Q |
153 |
ttggttttgaaggtac |
168 |
Q |
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| T |
45551109 |
ttgatattgaaggtac |
45551094 |
T |
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