View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_57 (Length: 249)
Name: NF20885_low_57
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 31713753 - 31713985
Alignment:
| Q |
1 |
tcacaattcttccactttgcttaaagctcaaagccacatatggaatcatatttgcaacttcataaattccatgtcacttaagtgtgtagttgacttagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31713753 |
tcacaattcttccactttgcttaaagctcaaagccacatatggaatcatatttgcaacttcataaattccatgtcacttaagtgtgtagttgacttagga |
31713852 |
T |
|
| Q |
101 |
atacctgatattatacacaactatggcaaacccatgccactttcaaaactcatttcttcactaccaatccacccttcnnnnnnntcctgcatctatcgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31713853 |
atacctgatattatacacaactatggcaaacccatgccactttcaaaactcatttcttcactaccaatccacccttcaaaaaaatcctgcatctatcgct |
31713952 |
T |
|
| Q |
201 |
taatgcgaatcatgactcaatctggcttcttct |
233 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
31713953 |
taatgcaaatcatgactcaatctggcttcttct |
31713985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 31734169 - 31734393
Alignment:
| Q |
9 |
cttccactttgcttaaagctcaaagccacatatggaatcatatttgcaacttcataaattccatgtcacttaagtgtgtagttgacttaggaatacctga |
108 |
Q |
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|||||| |||||| || |||||||| ||| |||||||||| |||| ||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| || |
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| T |
31734169 |
cttccaatttgctcaaggctcaaagtcacgtatggaatcacattttcaacttcataaattcaatgtcgcttaaatgtgtagttgacttaggcataccaga |
31734268 |
T |
|
| Q |
109 |
tattatacacaactatggcaaacccatgccactttcaaaactcatttcttcactaccaatccacccttcnnnnnnntcctgcatctatcgcttaatgcga |
208 |
Q |
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||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||| |
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| T |
31734269 |
tattatacacaaccatgggaaacccatgcctatctcaaaactcatttcttcactaccaatccacccttcaaaaaagccttgcatccatcgcttgatgcga |
31734368 |
T |
|
| Q |
209 |
atcatgactcaatctggcttcttct |
233 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
31734369 |
atcatgactcactctggcttcttct |
31734393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 31710763 - 31710987
Alignment:
| Q |
9 |
cttccactttgcttaaagctcaaagccacatatggaatcatatttgcaacttcataaattccatgtcacttaagtgtgtagttgacttaggaatacctga |
108 |
Q |
| |
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|||||| |||||| |||||||||||||| |||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||| ||||| || |
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| T |
31710763 |
cttccaatttgctcaaagctcaaagccatgtatggaatcacatgtttaacttcataaattccatgtcacttaaatgtgtagttgacttaggcataccaga |
31710862 |
T |
|
| Q |
109 |
tattatacacaactatggcaaacccatgccactttcaaaactcatttcttcactaccaatccacccttcnnnnnnntcctgcatctatcgcttaatgcga |
208 |
Q |
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||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||| |
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| T |
31710863 |
tatcatacacaactatggcaaacccataccactctcaaaactcatttcttcactatcaatccacccttcaaaaaaccacggcattcatcgcttgatgcga |
31710962 |
T |
|
| Q |
209 |
atcatgactcaatctggcttcttct |
233 |
Q |
| |
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||||||||||| || |||||||||| |
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| T |
31710963 |
atcatgactcactccggcttcttct |
31710987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 31702329 - 31702497
Alignment:
| Q |
9 |
cttccactttgcttaaagctcaaagccacatatggaatcatatttgcaacttcataaattccatgtcacttaagtgtgtagttgacttaggaatacctga |
108 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||| ||||| ||||| |||||||| |
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| T |
31702329 |
cttccaatttgctcaaagctcaaagccacatatggaatcacattttcaacttcataaattccatgtcccttaaatgtgtggttgatttaggcatacctga |
31702428 |
T |
|
| Q |
109 |
tattatacacaactatggcaaacccatgccactttcaaaactcatttcttcactaccaatccacccttc |
177 |
Q |
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||| |||||||| |||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |
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| T |
31702429 |
tatcatacacaattatggcaaacccatatcactctcaaaacttatttctttgctaccaatccacccttc |
31702497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 31683797 - 31683956
Alignment:
| Q |
16 |
tttgcttaaagctcaaagccacatatggaatcatatttgcaacttcataaattccatgtcacttaagtgtgtagttgacttaggaatacctgatattata |
115 |
Q |
| |
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|||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| |
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| T |
31683797 |
tttgctcaaagctcaaagccacatatggaaacacattttcaacttcataaattccatgtctcttaaatgtgtagtcgacttaggcataccagatatcata |
31683896 |
T |
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| Q |
116 |
cacaactatggcaaacccatgccactttcaaaactcatttcttcactaccaatccaccct |
175 |
Q |
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||||| ||||| | ||| ||| |||| |||||||||||| |||||| |||||| ||||| |
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| T |
31683897 |
cacaattatggtagacctatgtcactctcaaaactcattagttcacttccaatcaaccct |
31683956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 30569805 - 30569923
Alignment:
| Q |
59 |
ttcataaattccatgtcacttaagtgtgtagttgacttaggaatacctgatattatacacaactatggcaaacccatgccactttcaaaactcatttctt |
158 |
Q |
| |
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|||||||| || ||||| ||||| |||| | |||| || | ||||| ||| ||||||||||||||||| |||| || ||||| |||||||||||||||| |
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| T |
30569805 |
ttcataaactcaatgtcccttaaatgtgcaattgaattgtgtataccagatgttatacacaactatggccaaccaatcccactctcaaaactcatttctt |
30569904 |
T |
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| Q |
159 |
cactaccaatccacccttc |
177 |
Q |
| |
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|||||||||||||||| |
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| T |
30569905 |
tgttaccaatccacccttc |
30569923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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