View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20885_low_58 (Length: 248)

Name: NF20885_low_58
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20885_low_58
NF20885_low_58
[»] chr7 (5 HSPs)
chr7 (38-233)||(7477606-7477800)
chr7 (32-75)||(11698438-11698481)
chr7 (24-75)||(18261001-18261052)
chr7 (24-73)||(33631083-33631132)
chr7 (149-201)||(47441383-47441434)
[»] chr8 (2 HSPs)
chr8 (1-75)||(1946071-1946145)
chr8 (36-75)||(28566362-28566401)
[»] chr6 (2 HSPs)
chr6 (1-75)||(1161811-1161885)
chr6 (24-72)||(35163985-35164033)
[»] chr3 (8 HSPs)
chr3 (12-75)||(579818-579881)
chr3 (24-75)||(43191239-43191290)
chr3 (2-73)||(47361903-47361974)
chr3 (24-75)||(3422912-3422963)
chr3 (24-75)||(52657156-52657207)
chr3 (15-74)||(52662047-52662106)
chr3 (25-75)||(13165809-13165859)
chr3 (24-65)||(30272749-30272790)
[»] chr5 (3 HSPs)
chr5 (5-75)||(36874305-36874375)
chr5 (27-75)||(39044862-39044910)
chr5 (15-73)||(39790072-39790132)
[»] chr1 (1 HSPs)
chr1 (15-74)||(19176968-19177027)
[»] chr2 (2 HSPs)
chr2 (25-71)||(465422-465468)
chr2 (18-75)||(6840076-6840135)
[»] chr4 (5 HSPs)
chr4 (24-75)||(3937867-3937918)
chr4 (1-65)||(51806232-51806300)
chr4 (24-74)||(25110109-25110159)
chr4 (24-75)||(45067191-45067242)
chr4 (25-75)||(47159821-47159871)
[»] scaffold0002 (1 HSPs)
scaffold0002 (25-75)||(141129-141179)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 38 - 233
Target Start/End: Complemental strand, 7477800 - 7477606
Alignment:
Q  38 ataattgttttggttaatgaaagttatcactatttaccnnnnnnnnnntaataacttactctcactaataaatacactcgatggttagtttttcactcaa 137  Q
    |||||||||||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7477800 ataattgttttggttaatgaaagttatctctatttaccaaaaaaaaa-taataacttactctcactaataaatacactcgatggttagtttttcactcaa 7477702  T
Q  138 acaggtaataaatatacaacaattatgttttaaaacacatcttaagcacaataatcaaacatgcacgaagtcatagatcaccttagggttgtagct 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7477701 acaggtaataaatatacaacaattatgttttaaaacacatcttaagcacaataatcaaacatgcacgaagtcatagatcaccttagggttgtagct 7477606  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 11698481 - 11698438
Alignment:
Q  32 tttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  11698481 tttgtaataattgtttcggttaatgaaagttatctctatttacc 11698438  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 18261052 - 18261001
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    ||||||| |||||||||  ||||||||||||||||||||||| |||||||||    
T  18261052 ccatgtagtttgtaatatctgttttggttaatgaaagttatctctatttacc 18261001  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 33631132 - 33631083
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatcactattta 73  Q
    ||||||| |||||||||| | ||||||||||||||||||||| |||||||    
T  33631132 ccatgtagtttgtaataactcttttggttaatgaaagttatctctattta 33631083  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 47441383 - 47441434
Alignment:
Q  149 atatacaacaattatgttttaaaacacatcttaagcacaataatcaaacatgc 201  Q
    ||||||||||||||| |||| ||| ||||| ||||||||||||||||| ||||    
T  47441383 atatacaacaattatattttgaaatacatc-taagcacaataatcaaatatgc 47441434  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1946145 - 1946071
Alignment:
Q  1 tttgtctttgtggcttcttgttgccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||    
T  1946145 tttgtctttgtggcttcttgttgccatgtagtttgtaataattgttttggttaatgaaagttatcgctctttacc 1946071  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 28566401 - 28566362
Alignment:
Q  36 taataattgttttggttaatgaaagttatcactatttacc 75  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  28566401 taataattgtgttggttaatgaaagttatctctatttacc 28566362  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 1161811 - 1161885
Alignment:
Q  1 tttgtctttgtggcttcttgttgccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||    
T  1161811 tttgtctttgtggcttcttgttgccatgtagtttgtaataactgttttggttaatgaaagttatctctatttacc 1161885  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 35164033 - 35163985
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatcactattt 72  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||||    
T  35164033 ccatctaatttgtaataactgttttggttaatgaaagttatctctattt 35163985  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 579818 - 579881
Alignment:
Q  12 ggcttcttgttgccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    |||||| ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  579818 ggcttcgtgttgtcatgtagtttgtaataattgttttggttaatgaaagttatctctatttacc 579881  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 43191290 - 43191239
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  43191290 ccatgtagtttgtaataattgttttggttaatgaaagttatctctatttacc 43191239  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 47361903 - 47361974
Alignment:
Q  2 ttgtctttgtggcttcttgttgccatgtaatttgtaataattgttttggttaatgaaagttatcactattta 73  Q
    |||| |||||||||| |||||||| |||| |||||||| | ||||||||||||||||||||||| |||||||    
T  47361903 ttgtttttgtggctttttgttgccgtgtagtttgtaatgactgttttggttaatgaaagttatctctattta 47361974  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 3422963 - 3422912
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    ||||||| |||||||||| ||||||||||||||||||||||| |||||||||    
T  3422963 ccatgtagtttgtaataactgttttggttaatgaaagttatctctatttacc 3422912  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 52657207 - 52657156
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  52657207 ccatgtagtttgtaataattgttttggttaatgaaatttatctctatttacc 52657156  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 52662106 - 52662047
Alignment:
Q  15 ttcttgttgccatgtaatttgtaataattgttttggttaatgaaagttatcactatttac 74  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| ||| | ||||||||    
T  52662106 ttcttgatgccatgtagtttgtaataattgttttggttaatgaaatttacctctatttac 52662047  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 13165809 - 13165859
Alignment:
Q  25 catgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    |||| ||||||||||||||||||||||||||||||  |||| |||||||||    
T  13165809 catgaaatttgtaataattgttttggttaatgaaatatatctctatttacc 13165859  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 30272790 - 30272749
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatc 65  Q
    ||||||| |||||||||| |||||||||||||||||| ||||    
T  30272790 ccatgtagtttgtaataactgttttggttaatgaaagatatc 30272749  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 36874305 - 36874375
Alignment:
Q  5 tctttgtggcttcttgttgccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    ||||||||| || ||||||||||||| |||||||||| | |||||||||||||||||| || |||||||||    
T  36874305 tctttgtggtttgttgttgccatgtagtttgtaataactattttggttaatgaaagttttctctatttacc 36874375  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 39044910 - 39044862
Alignment:
Q  27 tgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||    
T  39044910 tgtagtttgtaataattgttttggttaatgaaagttatctccatttacc 39044862  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 39790132 - 39790072
Alignment:
Q  15 ttcttgttgccatgtaatttgtaataattgtttt--ggttaatgaaagttatcactattta 73  Q
    ||||||||| |||||| |||||||||||||||||  | ||||||||||||||| |||||||    
T  39790132 ttcttgttgtcatgtagtttgtaataattgtttttggtttaatgaaagttatctctattta 39790072  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 19176968 - 19177027
Alignment:
Q  15 ttcttgttgccatgtaatttgtaataattgttttggttaatgaaagttatcactatttac 74  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||| |||| || |||||    
T  19176968 ttcttgttgccatgtagtttataataattgttttggttaatgaaagatatctctctttac 19177027  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 465468 - 465422
Alignment:
Q  25 catgtaatttgtaataattgttttggttaatgaaagttatcactatt 71  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||    
T  465468 catgtagtttgtaataattgttttggttaatgaaagttatctctatt 465422  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 6840076 - 6840135
Alignment:
Q  18 ttgttgccatgtaatttgtaataattgtttt--ggttaatgaaagttatcactatttacc 75  Q
    ||||||||||||| |||||||||| ||||||  | ||| ||||||||||| |||||||||    
T  6840076 ttgttgccatgtagtttgtaataactgtttttggtttattgaaagttatctctatttacc 6840135  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 3937918 - 3937867
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    ||||||| |||||||||| |||||||||||||||||| |||| |||||||||    
T  3937918 ccatgtagtttgtaataactgttttggttaatgaaagatatctctatttacc 3937867  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 51806300 - 51806232
Alignment:
Q  1 tttgtctttgtggcttcttgttgccatgtaatt----tgtaataattgttttggttaatgaaagttatc 65  Q
    ||||||||||||||||||||| ||||||||  |    |||||||| |||||||||||||||||||||||    
T  51806300 tttgtctttgtggcttcttgtcgccatgtatgtagattgtaataactgttttggttaatgaaagttatc 51806232  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 25110109 - 25110159
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatcactatttac 74  Q
    ||||||| |||||||||| |||||||||||| |||||||||| ||||||||    
T  25110109 ccatgtagtttgtaataactgttttggttaacgaaagttatctctatttac 25110159  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 45067191 - 45067242
Alignment:
Q  24 ccatgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    ||||||| |||||||||| | ||||||||| ||||||||||| |||||||||    
T  45067191 ccatgtagtttgtaataactattttggttagtgaaagttatctctatttacc 45067242  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 47159871 - 47159821
Alignment:
Q  25 catgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    |||||| |||||||||| ||||||||||| ||||| ||||| |||||||||    
T  47159871 catgtagtttgtaataaatgttttggttagtgaaatttatctctatttacc 47159821  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 141179 - 141129
Alignment:
Q  25 catgtaatttgtaataattgttttggttaatgaaagttatcactatttacc 75  Q
    |||| ||||||||||||||||||||||||||||||  |||| |||||||||    
T  141179 catgaaatttgtaataattgttttggttaatgaaatatatctctatttacc 141129  T

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