View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_low_59 (Length: 248)
Name: NF20885_low_59
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_59 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 10976406 - 10976647
Alignment:
| Q |
9 |
cataggaagcaacagag-tcaatcttcatagtttcaagcataatggaccaaggtaaa-tatttatatagttgaataaaatatgaaacaacaatacctgaa |
106 |
Q |
| |
|
||||| ||||||||||| ||||| |||| | |||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10976406 |
catagaaagcaacagaggtcaatattcaagggatcaagcataatggaccaaggtaaaatagttatatagatgaataaaatatgaaacaacaatacctgaa |
10976505 |
T |
|
| Q |
107 |
tgttttcgatctcttcggcgatcatagacataccatagtcacatagtttgggaaagcgatgttcgtcaagtaaaacattgtttgtctttaatttgtttct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10976506 |
tgttttcgatctcttcggcgatcatagacataccatagtcacttagtttgggaaagcgatgttcgtcaagtaaaacattgtttgtctttaatttgtttct |
10976605 |
T |
|
| Q |
207 |
aaaacaacctggtataattccagtatgtaaaaaatgcaccgc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10976606 |
aaaacaacctggtataattccagtatgtaaaaaatgcaccgc |
10976647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 8168076 - 8167967
Alignment:
| Q |
136 |
ataccatagtcacatagtttgggaaagcgatgttcgtcaagtaaaacattgtttgtctttaatttgtttctaaaacaacctggtataattccagtatgta |
235 |
Q |
| |
|
||||||||||||| |||||| |||| || ||||| |||||||| ||| | |||||||||| || ||| |||||||| |||||||||| |||||||||| |
|
|
| T |
8168076 |
ataccatagtcacttagttttggaatgcagtgttcatcaagtaacacactctttgtctttagttggttgctaaaacatcctggtataacaccagtatgta |
8167977 |
T |
|
| Q |
236 |
aaaaatgcac |
245 |
Q |
| |
|
| |||||||| |
|
|
| T |
8167976 |
agaaatgcac |
8167967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University