View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_60 (Length: 247)
Name: NF20885_low_60
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 42875378 - 42875147
Alignment:
| Q |
1 |
caagaaaaaggtacactattaattatccatcggaagccgatgcgatgaatatagtgagttgtgggtttctcgggatctcttgtagtcgtttgaggatagc |
100 |
Q |
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| T |
42875378 |
caagaaaaaggtacactattaattatccatcggaagccgatgcgatgaatatagtgagttgtgggtttctcgggatctcttgtagtcgtttgaggatagc |
42875279 |
T |
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| Q |
101 |
tgatattagacaaaatgatttgagagtttgggaacatgttgaaaagaatcagtgggatttgttgcattgtattgatatatctacaaaattgccccaaaag |
200 |
Q |
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| T |
42875278 |
tgatattagacaacatgatttgagagtttgggaacatgttgaaaagaatcagtgggatttgttgcattgtattgatatatctacaaaattgccacaaaag |
42875179 |
T |
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| Q |
201 |
ttttgtgttaattactacaagagggttgcagg |
232 |
Q |
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| T |
42875178 |
ttttgtgttaattactacaagagggttgcagg |
42875147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 1049863 - 1049650
Alignment:
| Q |
19 |
ttaattatccatcggaagccgatgcgatgaatatagtgagttgtgggtttctcgggatctcttgtagtcgtttgaggatagctgatattagacaaaatga |
118 |
Q |
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| T |
1049863 |
ttaattatcccttagaagctgattcaatgaacataatgagttttggtttccttggaatctcttgtggttgtttgaggatagctgatattggacaaaataa |
1049764 |
T |
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| Q |
119 |
tttgagagtttgggaacatgttgaaaagaatcagtgggatttgttgcattgtattgatatatctacaaaattgccccaaaagttttgtgttaattactac |
218 |
Q |
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| T |
1049763 |
tttgagagtttgggaacttgttgaaaagaatcattgggatttgttgcatagcattgacatatccaaaaaaatgtcaaagaaattttgtggtaattattat |
1049664 |
T |
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| Q |
219 |
aagagggttgcagg |
232 |
Q |
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| T |
1049663 |
aagaaggttgcagg |
1049650 |
T |
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