View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_64 (Length: 241)
Name: NF20885_low_64
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_64 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 31544703 - 31544935
Alignment:
| Q |
19 |
gtgttcccatgatttccttgagtcaattttcacaactttagactttttgtgctgttgttgaccacccattattttctacttcttcaaaagggtgttatgt |
118 |
Q |
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| T |
31544703 |
gtgttcccatgatttccttgagtcaattttcacaactttagactttttgtgctgttgttgaccacccattattttctacttcttcaaaagggtgttatgt |
31544802 |
T |
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| Q |
119 |
gtg--------aaaatacaaac--tctggatagaaatatatgagtcctacacagacnnnnnnnnnnnnccgtagaaataagacaagagttaaattgacta |
208 |
Q |
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| T |
31544803 |
gtgtgtgtgtatatatacacacaatctagatagatatatatgagtcctacacacacagactatatatactgtagaaataagacaagaattgaattgacta |
31544902 |
T |
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| Q |
209 |
cgatataaccaatcttatctagctggggccatt |
241 |
Q |
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| T |
31544903 |
cgatataaccaatcttatctagctggggccatt |
31544935 |
T |
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