View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20885_low_66 (Length: 237)
Name: NF20885_low_66
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_66 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41485984 - 41485765
Alignment:
| Q |
1 |
aaaaaataaaagtggcctgcttacgtggtgaggttttgtgaaaaaagtgatggtccgaagcatcattggcaatgccaaattgcttacaactacgggattt |
100 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41485984 |
aaaaaataaaagttgcctgcttcatatgtgaggttttgtgaaaaaagtgatggcccgaagcatcattggcaataccaaattgcttacaactacgggattt |
41485885 |
T |
|
| Q |
101 |
actcgtaattccatctttgatatttgcatggtatggactgctactgccaatttccttgtgtaataaagcacatccaagcaaatatcaaggcaatcgttag |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41485884 |
actcgtaattccatcttttatatttgcatggtatggactgctactgctaatttccttgtgtaataaagcacatccaagc-aatatcaaggcaatcgttag |
41485786 |
T |
|
| Q |
201 |
aatgttaaaaatgggggttat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41485785 |
aatgttaaaaatgggggttat |
41485765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 52472715 - 52472612
Alignment:
| Q |
67 |
tggcaatgccaaattgcttacaactacgggatttactcgtaattccatctttgatatttgcatggtatggactgctactgccaatttccttgtgtaataa |
166 |
Q |
| |
|
||||||| ||||||||||| |||| ||| |||| || |||| |||||||||||||||||||||| | ||||| || |||| |||||| ||||||| |
|
|
| T |
52472715 |
tggcaatatcaaattgcttaaaacttcggaattttatcagaatttcatctttgatatttgcatggtaagaactgccaccgccagcttccttctgtaatag |
52472616 |
T |
|
| Q |
167 |
agca |
170 |
Q |
| |
|
|||| |
|
|
| T |
52472615 |
agca |
52472612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 1004264 - 1004206
Alignment:
| Q |
112 |
catctttgatatttgcatggtatggactgctactgccaatttccttgtgtaataaagca |
170 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
1004264 |
catctttgatattggcatggtatgaactgctactgccggtttccttcaataataaagca |
1004206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 1004375 - 1004318
Alignment:
| Q |
34 |
ttttgtgaaaaaagtgatggtccgaagcatcattggcaatgccaaattgcttacaact |
91 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||| | ||||||||||| |||| |
|
|
| T |
1004375 |
ttttatgaataaagtgatggtccgaagcatcattaacaaagtcaaattgcttaaaact |
1004318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University