View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20885_low_68 (Length: 236)
Name: NF20885_low_68
Description: NF20885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20885_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37647809 - 37647588
Alignment:
| Q |
1 |
caatttttgataatcttttgagctttagactatcctttgctgatcttccaaatgatgcaactctattgtttcgaaccaataaaaggttttcaggactaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37647809 |
caatttttgataatcttttgagctttagactatcctttgttgatcttccaaatgatgcaactctactgtttcgaaccaataaaaggttttcaggactaaa |
37647710 |
T |
|
| Q |
101 |
tagatttccaagtggtggagttgctgcattgccccttacttgttcaatggataaatgatcaaaccgccagaatctaagcaaaagagtaaacgcattagag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37647709 |
tagatttccaagtggtggagttgctgcattgccccttacttgttcaatggataaatggtcaaaccgccagaatctaagcaaaagagtaaacgcattagag |
37647610 |
T |
|
| Q |
201 |
aacacctcttgaggagagagtt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
37647609 |
aacacctcttgaggagagagtt |
37647588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 29686122 - 29686341
Alignment:
| Q |
3 |
atttttgataatcttttgagctttagactatcctttgctgatcttccaaatgatgcaactctattgtttcgaaccaataaaaggttttcaggactaaata |
102 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29686122 |
atttttgacaattttttgagctttagactatcctttgctgatcttccaaatgatgcaactctaccgtttcgaaccaataaaaggttttcaggactaaata |
29686221 |
T |
|
| Q |
103 |
gatttccaagtggtggagttgctgcattgccccttacttgttcaatggataaatgatcaaaccgccagaatctaagcaaaagagtaaacgcattagagaa |
202 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
29686222 |
gatttccaagtggtggagttgctggatttccccttacttattcaatgggtaagtgatcaaaccgtcagaatctaagcaaaagagtaaatgcattagagaa |
29686321 |
T |
|
| Q |
203 |
cacctcttgaggagagagtt |
222 |
Q |
| |
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|||||| || |||||||||| |
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| T |
29686322 |
cacctcatgtggagagagtt |
29686341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 29687670 - 29687889
Alignment:
| Q |
3 |
atttttgataatcttttgagctttagactatcctttgctgatcttccaaatgatgcaactctattgtttcgaaccaataaaaggttttcaggactaaata |
102 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29687670 |
atttttgacaattttttgagctttagactatcctttgctgatcttccaaatgatgcaactctaccgtttcgaaccaataaaaggttttcaggactaaata |
29687769 |
T |
|
| Q |
103 |
gatttccaagtggtggagttgctgcattgccccttacttgttcaatggataaatgatcaaaccgccagaatctaagcaaaagagtaaacgcattagagaa |
202 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
29687770 |
gatttccaagtggtggagttgctggatttccccttacttattcaatgggtaagtgatcaaaccgtcagaatctaagcaaaagagtaaatgcattagagaa |
29687869 |
T |
|
| Q |
203 |
cacctcttgaggagagagtt |
222 |
Q |
| |
|
|||||| || |||||||||| |
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| T |
29687870 |
cacctcatgtggagagagtt |
29687889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 8288265 - 8288076
Alignment:
| Q |
5 |
ttttgataatcttttgagctttagactatcctttgctgatcttccaaatgatgcaactctattgtttcgaaccaataaaaggttttcaggactaaataga |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||| || | |||| |||| |||||||||||||||||| ||||||||| || |
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| T |
8288265 |
ttttgatcgtcttttgagctttagactatcttttgctgatcttccaaattttgtgagtctaccgttttgaaccaataaaaggtttttaggactaaacagc |
8288166 |
T |
|
| Q |
105 |
tttccaagtggtggagttgctgcattgccccttacttgttcaatggataaatgatcaaaccgccagaatctaagcaaaagagtaaacgcat |
195 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||| |||| ||||||||||||||| |||| |
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| T |
8288165 |
gatccaagtggtggagttgctgcattggcccttacttgttcaatgggtaaacgatcaaacc-ccaaaatcgaagcaaaagagtaaatgcat |
8288076 |
T |
|
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